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Gene: LSR |
Gene summary for LSR |
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Gene information | Species | Human | Gene symbol | LSR | Gene ID | 51599 |
Gene name | lipolysis stimulated lipoprotein receptor | |
Gene Alias | ILDR3 | |
Cytomap | 19q13.12 | |
Gene Type | protein-coding | GO ID | GO:0001889 | UniProtAcc | Q86X29 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
51599 | LSR | GSM4909281 | Human | Breast | IDC | 5.53e-19 | 5.72e-01 | 0.21 |
51599 | LSR | GSM4909282 | Human | Breast | IDC | 5.58e-33 | 8.20e-01 | -0.0288 |
51599 | LSR | GSM4909285 | Human | Breast | IDC | 2.29e-29 | 5.94e-01 | 0.21 |
51599 | LSR | GSM4909293 | Human | Breast | IDC | 1.17e-04 | 1.65e-01 | 0.1581 |
51599 | LSR | GSM4909295 | Human | Breast | IDC | 2.73e-03 | 4.45e-01 | 0.0898 |
51599 | LSR | GSM4909296 | Human | Breast | IDC | 9.67e-03 | 3.66e-02 | 0.1524 |
51599 | LSR | GSM4909297 | Human | Breast | IDC | 2.07e-02 | 1.76e-02 | 0.1517 |
51599 | LSR | GSM4909311 | Human | Breast | IDC | 2.74e-16 | -1.31e-01 | 0.1534 |
51599 | LSR | GSM4909312 | Human | Breast | IDC | 2.08e-03 | 4.30e-02 | 0.1552 |
51599 | LSR | GSM4909317 | Human | Breast | IDC | 3.29e-04 | 3.63e-01 | 0.1355 |
51599 | LSR | GSM4909319 | Human | Breast | IDC | 3.87e-18 | -1.25e-01 | 0.1563 |
51599 | LSR | GSM4909321 | Human | Breast | IDC | 3.75e-05 | -2.99e-03 | 0.1559 |
51599 | LSR | brca1 | Human | Breast | Precancer | 4.26e-10 | 4.31e-01 | -0.0338 |
51599 | LSR | brca2 | Human | Breast | Precancer | 2.72e-07 | 3.63e-01 | -0.024 |
51599 | LSR | brca3 | Human | Breast | Precancer | 3.20e-15 | 4.25e-01 | -0.0263 |
51599 | LSR | NCCBC2 | Human | Breast | DCIS | 3.41e-03 | -8.36e-03 | 0.1554 |
51599 | LSR | NCCBC5 | Human | Breast | DCIS | 1.90e-10 | 3.96e-01 | 0.2046 |
51599 | LSR | P1 | Human | Breast | IDC | 1.90e-05 | -1.31e-01 | 0.1527 |
51599 | LSR | P2 | Human | Breast | IDC | 4.93e-02 | 9.44e-02 | 0.21 |
51599 | LSR | DCIS2 | Human | Breast | DCIS | 1.63e-51 | 2.45e-01 | 0.0085 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0001764 | Lung | IAC | neuron migration | 31/2061 | 156/18723 | 7.89e-04 | 1.02e-02 | 31 |
GO:00017383 | Lung | IAC | morphogenesis of a polarized epithelium | 21/2061 | 94/18723 | 1.15e-03 | 1.35e-02 | 21 |
GO:00018434 | Lung | IAC | neural tube closure | 20/2061 | 88/18723 | 1.20e-03 | 1.38e-02 | 20 |
GO:00018385 | Lung | IAC | embryonic epithelial tube formation | 25/2061 | 121/18723 | 1.38e-03 | 1.53e-02 | 25 |
GO:00606064 | Lung | IAC | tube closure | 20/2061 | 89/18723 | 1.39e-03 | 1.53e-02 | 20 |
GO:00611382 | Lung | IAC | morphogenesis of a branching epithelium | 34/2061 | 182/18723 | 1.41e-03 | 1.54e-02 | 34 |
GO:00351485 | Lung | IAC | tube formation | 29/2061 | 148/18723 | 1.44e-03 | 1.55e-02 | 29 |
GO:00219155 | Lung | IAC | neural tube development | 29/2061 | 152/18723 | 2.19e-03 | 2.15e-02 | 29 |
GO:00163312 | Lung | IAC | morphogenesis of embryonic epithelium | 28/2061 | 147/18723 | 2.65e-03 | 2.44e-02 | 28 |
GO:00303243 | Lung | IAC | lung development | 32/2061 | 177/18723 | 3.26e-03 | 2.80e-02 | 32 |
GO:0060071 | Lung | IAC | Wnt signaling pathway, planar cell polarity pathway | 13/2061 | 52/18723 | 3.45e-03 | 2.94e-02 | 13 |
GO:20000272 | Lung | IAC | regulation of animal organ morphogenesis | 24/2061 | 125/18723 | 4.62e-03 | 3.65e-02 | 24 |
GO:00303233 | Lung | IAC | respiratory tube development | 32/2061 | 181/18723 | 4.63e-03 | 3.65e-02 | 32 |
GO:00721755 | Lung | IAC | epithelial tube formation | 25/2061 | 132/18723 | 4.69e-03 | 3.68e-02 | 25 |
GO:0090175 | Lung | IAC | regulation of establishment of planar polarity | 13/2061 | 56/18723 | 6.78e-03 | 4.73e-02 | 13 |
GO:001605512 | Lung | AIS | Wnt signaling pathway | 91/1849 | 444/18723 | 9.38e-12 | 5.47e-09 | 91 |
GO:019873812 | Lung | AIS | cell-cell signaling by wnt | 91/1849 | 446/18723 | 1.22e-11 | 6.13e-09 | 91 |
GO:003295613 | Lung | AIS | regulation of actin cytoskeleton organization | 63/1849 | 358/18723 | 4.06e-06 | 2.09e-04 | 63 |
GO:003297013 | Lung | AIS | regulation of actin filament-based process | 68/1849 | 397/18723 | 4.49e-06 | 2.27e-04 | 68 |
GO:000726512 | Lung | AIS | Ras protein signal transduction | 60/1849 | 337/18723 | 4.68e-06 | 2.31e-04 | 60 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
LSR | SNV | Missense_Mutation | rs748784670 | c.686N>G | p.Asn229Ser | p.N229S | Q86X29 | protein_coding | deleterious(0.01) | possibly_damaging(0.833) | TCGA-A1-A0SK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
LSR | SNV | Missense_Mutation | c.1340N>T | p.Ser447Phe | p.S447F | Q86X29 | protein_coding | tolerated(0.73) | benign(0.006) | TCGA-A8-A06X-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
LSR | SNV | Missense_Mutation | c.1636N>G | p.Ser546Ala | p.S546A | Q86X29 | protein_coding | tolerated(0.15) | benign(0.005) | TCGA-AN-A0FL-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
LSR | SNV | Missense_Mutation | c.1393N>G | p.Pro465Ala | p.P465A | Q86X29 | protein_coding | tolerated(0.28) | benign(0.027) | TCGA-AR-A256-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | PD | |
LSR | SNV | Missense_Mutation | c.1631N>G | p.Pro544Arg | p.P544R | Q86X29 | protein_coding | tolerated(0.07) | benign(0.221) | TCGA-D8-A147-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicine | SD | |
LSR | SNV | Missense_Mutation | c.424N>T | p.Pro142Ser | p.P142S | Q86X29 | protein_coding | tolerated(0.09) | benign(0.082) | TCGA-E2-A1LB-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | SD | |
LSR | SNV | Missense_Mutation | rs775741599 | c.712G>A | p.Val238Ile | p.V238I | Q86X29 | protein_coding | deleterious(0) | probably_damaging(0.937) | TCGA-E2-A574-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | adriamycin | SD |
LSR | deletion | Frame_Shift_Del | novel | c.629delN | p.Asp212ThrfsTer46 | p.D212Tfs*46 | Q86X29 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
LSR | SNV | Missense_Mutation | rs755436260 | c.1000G>A | p.Ala334Thr | p.A334T | Q86X29 | protein_coding | tolerated(0.28) | benign(0.011) | TCGA-AA-3947-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
LSR | SNV | Missense_Mutation | rs372794690 | c.1246N>A | p.Asp416Asn | p.D416N | Q86X29 | protein_coding | deleterious(0.03) | probably_damaging(0.997) | TCGA-AZ-6601-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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