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Gene: IFI6 |
Gene summary for IFI6 |
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Gene information | Species | Human | Gene symbol | IFI6 | Gene ID | 2537 |
Gene name | interferon alpha inducible protein 6 | |
Gene Alias | 6-16 | |
Cytomap | 1p35.3 | |
Gene Type | protein-coding | GO ID | GO:0001836 | UniProtAcc | P09912 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
2537 | IFI6 | GSM4909281 | Human | Breast | IDC | 9.91e-110 | 1.58e+00 | 0.21 |
2537 | IFI6 | GSM4909282 | Human | Breast | IDC | 6.94e-03 | 1.89e-01 | -0.0288 |
2537 | IFI6 | GSM4909285 | Human | Breast | IDC | 4.30e-12 | 5.17e-01 | 0.21 |
2537 | IFI6 | GSM4909287 | Human | Breast | IDC | 6.14e-37 | 8.84e-01 | 0.2057 |
2537 | IFI6 | GSM4909288 | Human | Breast | IDC | 2.27e-12 | 7.67e-01 | 0.0988 |
2537 | IFI6 | GSM4909290 | Human | Breast | IDC | 3.06e-22 | 6.16e-01 | 0.2096 |
2537 | IFI6 | GSM4909291 | Human | Breast | IDC | 6.85e-03 | 2.60e-01 | 0.1753 |
2537 | IFI6 | GSM4909293 | Human | Breast | IDC | 1.69e-28 | 6.55e-01 | 0.1581 |
2537 | IFI6 | GSM4909294 | Human | Breast | IDC | 2.48e-06 | 4.02e-01 | 0.2022 |
2537 | IFI6 | GSM4909295 | Human | Breast | IDC | 3.27e-24 | 9.57e-01 | 0.0898 |
2537 | IFI6 | GSM4909297 | Human | Breast | IDC | 1.01e-54 | 1.30e+00 | 0.1517 |
2537 | IFI6 | GSM4909300 | Human | Breast | IDC | 2.76e-04 | 3.77e-01 | 0.0334 |
2537 | IFI6 | GSM4909301 | Human | Breast | IDC | 1.22e-17 | 5.18e-01 | 0.1577 |
2537 | IFI6 | GSM4909302 | Human | Breast | IDC | 2.00e-10 | 3.81e-01 | 0.1545 |
2537 | IFI6 | GSM4909304 | Human | Breast | IDC | 4.77e-46 | 8.61e-01 | 0.1636 |
2537 | IFI6 | GSM4909305 | Human | Breast | IDC | 4.29e-28 | 7.08e-01 | 0.0436 |
2537 | IFI6 | GSM4909306 | Human | Breast | IDC | 2.12e-52 | 9.68e-01 | 0.1564 |
2537 | IFI6 | GSM4909307 | Human | Breast | IDC | 1.17e-99 | 1.50e+00 | 0.1569 |
2537 | IFI6 | GSM4909308 | Human | Breast | IDC | 3.32e-120 | 1.63e+00 | 0.158 |
2537 | IFI6 | GSM4909309 | Human | Breast | IDC | 1.70e-87 | 1.54e+00 | 0.0483 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0003254 | Endometrium | EEC | regulation of membrane depolarization | 12/2168 | 45/18723 | 4.18e-03 | 2.73e-02 | 12 |
GO:0051900 | Endometrium | EEC | regulation of mitochondrial depolarization | 7/2168 | 20/18723 | 5.46e-03 | 3.32e-02 | 7 |
GO:00018369 | Endometrium | EEC | release of cytochrome c from mitochondria | 14/2168 | 59/18723 | 6.44e-03 | 3.77e-02 | 14 |
GO:20012391 | Endometrium | EEC | regulation of extrinsic apoptotic signaling pathway in absence of ligand | 11/2168 | 43/18723 | 8.36e-03 | 4.59e-02 | 11 |
GO:0097193111 | Esophagus | ESCC | intrinsic apoptotic signaling pathway | 222/8552 | 288/18723 | 5.87e-28 | 2.02e-25 | 222 |
GO:2001233111 | Esophagus | ESCC | regulation of apoptotic signaling pathway | 256/8552 | 356/18723 | 4.11e-24 | 1.04e-21 | 256 |
GO:0097191111 | Esophagus | ESCC | extrinsic apoptotic signaling pathway | 159/8552 | 219/18723 | 4.12e-16 | 2.94e-14 | 159 |
GO:2001234111 | Esophagus | ESCC | negative regulation of apoptotic signaling pathway | 161/8552 | 224/18723 | 1.24e-15 | 8.09e-14 | 161 |
GO:000961518 | Esophagus | ESCC | response to virus | 238/8552 | 367/18723 | 6.65e-14 | 3.32e-12 | 238 |
GO:2001236111 | Esophagus | ESCC | regulation of extrinsic apoptotic signaling pathway | 111/8552 | 151/18723 | 2.97e-12 | 1.18e-10 | 111 |
GO:0008637110 | Esophagus | ESCC | apoptotic mitochondrial changes | 83/8552 | 107/18723 | 1.43e-11 | 5.08e-10 | 83 |
GO:2000116111 | Esophagus | ESCC | regulation of cysteine-type endopeptidase activity | 158/8552 | 235/18723 | 1.67e-11 | 5.90e-10 | 158 |
GO:0043281111 | Esophagus | ESCC | regulation of cysteine-type endopeptidase activity involved in apoptotic process | 143/8552 | 209/18723 | 2.12e-11 | 7.31e-10 | 143 |
GO:00516075 | Esophagus | ESCC | defense response to virus | 171/8552 | 265/18723 | 3.91e-10 | 1.05e-08 | 171 |
GO:01405465 | Esophagus | ESCC | defense response to symbiont | 171/8552 | 265/18723 | 3.91e-10 | 1.05e-08 | 171 |
GO:0052547111 | Esophagus | ESCC | regulation of peptidase activity | 275/8552 | 461/18723 | 7.54e-10 | 1.88e-08 | 275 |
GO:0052548111 | Esophagus | ESCC | regulation of endopeptidase activity | 253/8552 | 432/18723 | 3.68e-08 | 6.78e-07 | 253 |
GO:000183619 | Esophagus | ESCC | release of cytochrome c from mitochondria | 47/8552 | 59/18723 | 9.02e-08 | 1.51e-06 | 47 |
GO:2000117110 | Esophagus | ESCC | negative regulation of cysteine-type endopeptidase activity | 63/8552 | 86/18723 | 1.84e-07 | 2.88e-06 | 63 |
GO:0043154110 | Esophagus | ESCC | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process | 58/8552 | 78/18723 | 2.38e-07 | 3.61e-06 | 58 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
IFI6 | insertion | Frame_Shift_Ins | novel | c.352_353insT | p.Asn118IlefsTer16 | p.N118Ifs*16 | P09912 | protein_coding | TCGA-E9-A22H-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | ||
IFI6 | insertion | In_Frame_Ins | novel | c.350_351insCACCAA | p.Gly117_Asn118insThrAsn | p.G117_N118insTN | P09912 | protein_coding | TCGA-E9-A22H-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | ||
IFI6 | SNV | Missense_Mutation | novel | c.239N>A | p.Ala80Asp | p.A80D | P09912 | protein_coding | deleterious(0) | probably_damaging(0.998) | TCGA-5M-AAT4-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Unknown | Unknown | PD |
IFI6 | SNV | Missense_Mutation | novel | c.349N>T | p.Gly117Cys | p.G117C | P09912 | protein_coding | deleterious(0.01) | probably_damaging(0.923) | TCGA-AA-3811-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD |
IFI6 | SNV | Missense_Mutation | c.50N>T | p.Thr17Ile | p.T17I | P09912 | protein_coding | deleterious_low_confidence(0) | possibly_damaging(0.525) | TCGA-AU-6004-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
IFI6 | deletion | Frame_Shift_Del | novel | c.48_52delNNNNN | p.Phe16LeufsTer8 | p.F16Lfs*8 | P09912 | protein_coding | TCGA-AA-3877-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
IFI6 | SNV | Missense_Mutation | novel | c.91N>A | p.Ala31Thr | p.A31T | P09912 | protein_coding | tolerated(0.51) | benign(0.003) | TCGA-AP-A0LM-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Chemotherapy | cisplatin | SD |
IFI6 | SNV | Missense_Mutation | novel | c.376N>A | p.Ala126Thr | p.A126T | P09912 | protein_coding | tolerated(1) | benign(0) | TCGA-AP-A1DV-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
IFI6 | SNV | Missense_Mutation | c.332G>A | p.Gly111Asp | p.G111D | P09912 | protein_coding | deleterious(0) | possibly_damaging(0.8) | TCGA-B5-A11E-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
IFI6 | SNV | Missense_Mutation | novel | c.44T>C | p.Leu15Pro | p.L15P | P09912 | protein_coding | deleterious(0) | probably_damaging(0.976) | TCGA-FI-A2D0-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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