Tissue | Expression Dynamics | Abbreviation |
Endometrium | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Endometrium/FGF13_pca_on_diff_genes.png) | AEH: Atypical endometrial hyperplasia |
EEC: Endometrioid Cancer |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/FGF13_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/FGF13_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/FGF13_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Prostate | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Prostate/FGF13_pca_on_diff_genes.png) | BPH: Benign Prostatic Hyperplasia |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00303083 | Prostate | BPH | negative regulation of cell growth | 50/3107 | 188/18723 | 3.33e-04 | 2.52e-03 | 50 |
GO:00030127 | Prostate | BPH | muscle system process | 103/3107 | 452/18723 | 3.54e-04 | 2.62e-03 | 103 |
GO:00519604 | Prostate | BPH | regulation of nervous system development | 100/3107 | 443/18723 | 6.02e-04 | 4.16e-03 | 100 |
GO:009890110 | Prostate | BPH | regulation of cardiac muscle cell action potential | 12/3107 | 27/18723 | 6.34e-04 | 4.32e-03 | 12 |
GO:00467854 | Prostate | BPH | microtubule polymerization | 26/3107 | 83/18723 | 6.67e-04 | 4.48e-03 | 26 |
GO:00605608 | Prostate | BPH | developmental growth involved in morphogenesis | 58/3107 | 234/18723 | 8.28e-04 | 5.40e-03 | 58 |
GO:00313457 | Prostate | BPH | negative regulation of cell projection organization | 47/3107 | 186/18723 | 1.61e-03 | 9.33e-03 | 47 |
GO:0050890 | Prostate | BPH | cognition | 69/3107 | 296/18723 | 1.68e-03 | 9.69e-03 | 69 |
GO:008600410 | Prostate | BPH | regulation of cardiac muscle cell contraction | 13/3107 | 34/18723 | 2.06e-03 | 1.16e-02 | 13 |
GO:00107214 | Prostate | BPH | negative regulation of cell development | 45/3107 | 180/18723 | 2.49e-03 | 1.34e-02 | 45 |
GO:00109776 | Prostate | BPH | negative regulation of neuron projection development | 36/3107 | 137/18723 | 2.64e-03 | 1.41e-02 | 36 |
GO:00083617 | Prostate | BPH | regulation of cell size | 45/3107 | 181/18723 | 2.79e-03 | 1.47e-02 | 45 |
GO:19031156 | Prostate | BPH | regulation of actin filament-based movement | 14/3107 | 39/18723 | 2.81e-03 | 1.48e-02 | 14 |
GO:00486388 | Prostate | BPH | regulation of developmental growth | 74/3107 | 330/18723 | 3.43e-03 | 1.76e-02 | 74 |
GO:00507706 | Prostate | BPH | regulation of axonogenesis | 39/3107 | 154/18723 | 3.65e-03 | 1.85e-02 | 39 |
GO:00311102 | Prostate | BPH | regulation of microtubule polymerization or depolymerization | 25/3107 | 88/18723 | 3.76e-03 | 1.89e-02 | 25 |
GO:0007611 | Prostate | BPH | learning or memory | 59/3107 | 255/18723 | 4.12e-03 | 2.04e-02 | 59 |
GO:000202810 | Prostate | BPH | regulation of sodium ion transport | 25/3107 | 90/18723 | 5.18e-03 | 2.43e-02 | 25 |
GO:190230514 | Prostate | BPH | regulation of sodium ion transmembrane transport | 20/3107 | 68/18723 | 5.92e-03 | 2.73e-02 | 20 |
GO:00436243 | Prostate | BPH | cellular protein complex disassembly | 34/3107 | 136/18723 | 7.81e-03 | 3.42e-02 | 34 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
FGF13 | SNV | Missense_Mutation | | c.500N>T | p.Ser167Leu | p.S167L | Q92913 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-BH-A18P-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | PD |
FGF13 | SNV | Missense_Mutation | | c.705N>C | p.Lys235Asn | p.K235N | Q92913 | protein_coding | deleterious_low_confidence(0.01) | possibly_damaging(0.696) | TCGA-C8-A275-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
FGF13 | insertion | Frame_Shift_Ins | novel | c.26_27insGTGCATGTGTGTGCGTGTGCGCGAGTGTGCAT | p.Glu10CysfsTer11 | p.E10Cfs*11 | Q92913 | protein_coding | | | TCGA-E9-A1NC-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | CR |
FGF13 | deletion | Frame_Shift_Del | novel | c.555delA | p.Glu186LysfsTer5 | p.E186Kfs*5 | Q92913 | protein_coding | | | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD |
FGF13 | SNV | Missense_Mutation | novel | c.8G>A | p.Gly3Glu | p.G3E | Q92913 | protein_coding | deleterious_low_confidence(0) | benign(0.066) | TCGA-VS-A958-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
FGF13 | SNV | Missense_Mutation | | c.604N>T | p.Ala202Ser | p.A202S | Q92913 | protein_coding | tolerated(0.46) | possibly_damaging(0.505) | TCGA-A6-5665-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
FGF13 | SNV | Missense_Mutation | novel | c.190N>A | p.His64Asn | p.H64N | Q92913 | protein_coding | tolerated(0.55) | benign(0.046) | TCGA-AA-3855-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
FGF13 | SNV | Missense_Mutation | rs762632439 | c.680N>A | p.Arg227Gln | p.R227Q | Q92913 | protein_coding | tolerated_low_confidence(0.27) | possibly_damaging(0.815) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR |
FGF13 | SNV | Missense_Mutation | | c.550N>G | p.Asn184Asp | p.N184D | Q92913 | protein_coding | tolerated(0.08) | possibly_damaging(0.448) | TCGA-AD-6964-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | folfox | PD |
FGF13 | SNV | Missense_Mutation | novel | c.605N>T | p.Ala202Val | p.A202V | Q92913 | protein_coding | deleterious(0.04) | probably_damaging(0.947) | TCGA-AZ-6598-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |