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Gene: LINC01184 |
Gene summary for LINC01184 |
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Gene information | Species | Human | Gene symbol | LINC01184 | Gene ID | 644873 |
Gene name | long intergenic non-protein coding RNA 1184 | |
Gene Alias | LINC01184 | |
Cytomap | 5q23.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
644873 | LINC01184 | HTA11_3410_2000001011 | Human | Colorectum | AD | 7.25e-09 | -4.19e-01 | 0.0155 |
644873 | LINC01184 | HTA11_2487_2000001011 | Human | Colorectum | SER | 3.56e-08 | -6.30e-01 | -0.1808 |
644873 | LINC01184 | HTA11_3361_2000001011 | Human | Colorectum | AD | 1.86e-05 | -5.85e-01 | -0.1207 |
644873 | LINC01184 | HTA11_83_2000001011 | Human | Colorectum | SER | 1.23e-04 | -5.66e-01 | -0.1526 |
644873 | LINC01184 | HTA11_696_2000001011 | Human | Colorectum | AD | 1.11e-07 | -3.93e-01 | -0.1464 |
644873 | LINC01184 | HTA11_866_2000001011 | Human | Colorectum | AD | 1.49e-02 | -2.85e-01 | -0.1001 |
644873 | LINC01184 | HTA11_8622_2000001021 | Human | Colorectum | SER | 1.27e-02 | -5.96e-01 | 0.0528 |
644873 | LINC01184 | HTA11_7696_3000711011 | Human | Colorectum | AD | 4.94e-04 | -3.59e-01 | 0.0674 |
644873 | LINC01184 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 5.46e-13 | -4.33e-01 | 0.3005 |
644873 | LINC01184 | A002-C-010 | Human | Colorectum | FAP | 8.21e-05 | 3.67e-01 | 0.242 |
644873 | LINC01184 | A015-C-203 | Human | Colorectum | FAP | 1.31e-24 | -3.25e-01 | -0.1294 |
644873 | LINC01184 | A015-C-204 | Human | Colorectum | FAP | 8.38e-03 | -1.08e-01 | -0.0228 |
644873 | LINC01184 | A002-C-201 | Human | Colorectum | FAP | 6.92e-08 | -1.81e-01 | 0.0324 |
644873 | LINC01184 | A002-C-203 | Human | Colorectum | FAP | 3.83e-05 | 3.14e-01 | 0.2786 |
644873 | LINC01184 | A001-C-119 | Human | Colorectum | FAP | 2.24e-11 | -5.32e-01 | -0.1557 |
644873 | LINC01184 | A001-C-108 | Human | Colorectum | FAP | 3.20e-12 | -1.53e-01 | -0.0272 |
644873 | LINC01184 | A002-C-205 | Human | Colorectum | FAP | 8.37e-18 | -2.44e-01 | -0.1236 |
644873 | LINC01184 | A001-C-104 | Human | Colorectum | FAP | 6.84e-04 | -1.21e-01 | 0.0184 |
644873 | LINC01184 | A015-C-006 | Human | Colorectum | FAP | 3.97e-12 | -2.61e-01 | -0.0994 |
644873 | LINC01184 | A015-C-106 | Human | Colorectum | FAP | 1.33e-06 | 6.63e-02 | -0.0511 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Thyroid | PTC | ![]() |
Thyroid | goiters | ![]() |
Thyroid | ATC | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
Page: 1 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
Page: 1 |