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Gene: FIRRE |
Gene summary for FIRRE |
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Gene information | Species | Human | Gene symbol | FIRRE | Gene ID | 286467 |
Gene name | firre intergenic repeating RNA element | |
Gene Alias | LINC01200 | |
Cytomap | Xq26.2 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
286467 | FIRRE | HTA11_1391_2000001011 | Human | Colorectum | AD | 7.76e-07 | 3.89e-01 | -0.059 |
286467 | FIRRE | HTA11_7696_3000711011 | Human | Colorectum | AD | 3.65e-17 | 5.28e-01 | 0.0674 |
286467 | FIRRE | HTA11_99999965104_69814 | Human | Colorectum | MSS | 1.78e-13 | 5.99e-01 | 0.281 |
286467 | FIRRE | A002-C-203 | Human | Colorectum | FAP | 9.66e-04 | 3.26e-01 | 0.2786 |
286467 | FIRRE | A001-C-104 | Human | Colorectum | FAP | 1.33e-02 | 2.82e-01 | 0.0184 |
286467 | FIRRE | AEH-subject1 | Human | Endometrium | AEH | 1.44e-13 | 3.16e-01 | -0.3059 |
286467 | FIRRE | LZE7T | Human | Esophagus | ESCC | 4.33e-11 | 4.31e-01 | 0.0667 |
286467 | FIRRE | LZE22T | Human | Esophagus | ESCC | 1.57e-02 | 2.22e-01 | 0.068 |
286467 | FIRRE | LZE24T | Human | Esophagus | ESCC | 1.80e-03 | 1.28e-01 | 0.0596 |
286467 | FIRRE | P1T-E | Human | Esophagus | ESCC | 1.05e-09 | 3.99e-01 | 0.0875 |
286467 | FIRRE | P2T-E | Human | Esophagus | ESCC | 3.75e-03 | 9.70e-02 | 0.1177 |
286467 | FIRRE | P4T-E | Human | Esophagus | ESCC | 9.91e-08 | 1.96e-01 | 0.1323 |
286467 | FIRRE | P8T-E | Human | Esophagus | ESCC | 7.31e-14 | 2.73e-01 | 0.0889 |
286467 | FIRRE | P10T-E | Human | Esophagus | ESCC | 1.88e-11 | 2.28e-01 | 0.116 |
286467 | FIRRE | P20T-E | Human | Esophagus | ESCC | 3.34e-15 | 3.19e-01 | 0.1124 |
286467 | FIRRE | P22T-E | Human | Esophagus | ESCC | 1.75e-25 | 4.31e-01 | 0.1236 |
286467 | FIRRE | P23T-E | Human | Esophagus | ESCC | 2.33e-11 | 2.97e-01 | 0.108 |
286467 | FIRRE | P26T-E | Human | Esophagus | ESCC | 2.03e-09 | 2.23e-01 | 0.1276 |
286467 | FIRRE | P27T-E | Human | Esophagus | ESCC | 9.53e-09 | 2.21e-01 | 0.1055 |
286467 | FIRRE | P28T-E | Human | Esophagus | ESCC | 6.56e-15 | 2.78e-01 | 0.1149 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Esophagus | ESCC | ![]() |
Skin | AK | ![]() |
Skin | SCCIS | ![]() |
Skin | cSCC | ![]() |
Thyroid | HT | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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