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Gene: VPS9D1-AS1 |
Gene summary for VPS9D1-AS1 |
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Gene information | Species | Human | Gene symbol | VPS9D1-AS1 | Gene ID | 100128881 |
Gene name | VPS9D1 antisense RNA 1 | |
Gene Alias | MYU | |
Cytomap | 16q24.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
100128881 | VPS9D1-AS1 | LZE4T | Human | Esophagus | ESCC | 3.03e-04 | 1.17e-01 | 0.0811 |
100128881 | VPS9D1-AS1 | LZE24T | Human | Esophagus | ESCC | 2.00e-02 | 9.98e-02 | 0.0596 |
100128881 | VPS9D1-AS1 | LZE21T | Human | Esophagus | ESCC | 4.33e-03 | 2.16e-01 | 0.0655 |
100128881 | VPS9D1-AS1 | P2T-E | Human | Esophagus | ESCC | 4.16e-20 | 1.87e-01 | 0.1177 |
100128881 | VPS9D1-AS1 | P4T-E | Human | Esophagus | ESCC | 8.63e-21 | 6.16e-01 | 0.1323 |
100128881 | VPS9D1-AS1 | P5T-E | Human | Esophagus | ESCC | 2.71e-29 | 6.38e-01 | 0.1327 |
100128881 | VPS9D1-AS1 | P8T-E | Human | Esophagus | ESCC | 1.12e-05 | 8.99e-02 | 0.0889 |
100128881 | VPS9D1-AS1 | P12T-E | Human | Esophagus | ESCC | 7.19e-15 | 2.50e-01 | 0.1122 |
100128881 | VPS9D1-AS1 | P15T-E | Human | Esophagus | ESCC | 1.87e-14 | 2.33e-01 | 0.1149 |
100128881 | VPS9D1-AS1 | P16T-E | Human | Esophagus | ESCC | 2.42e-06 | 1.23e-01 | 0.1153 |
100128881 | VPS9D1-AS1 | P17T-E | Human | Esophagus | ESCC | 1.62e-06 | 3.01e-01 | 0.1278 |
100128881 | VPS9D1-AS1 | P19T-E | Human | Esophagus | ESCC | 4.42e-03 | 5.32e-01 | 0.1662 |
100128881 | VPS9D1-AS1 | P20T-E | Human | Esophagus | ESCC | 1.03e-05 | 1.13e-01 | 0.1124 |
100128881 | VPS9D1-AS1 | P21T-E | Human | Esophagus | ESCC | 1.55e-17 | 4.07e-01 | 0.1617 |
100128881 | VPS9D1-AS1 | P22T-E | Human | Esophagus | ESCC | 3.56e-03 | 1.39e-01 | 0.1236 |
100128881 | VPS9D1-AS1 | P23T-E | Human | Esophagus | ESCC | 4.07e-14 | 3.99e-01 | 0.108 |
100128881 | VPS9D1-AS1 | P24T-E | Human | Esophagus | ESCC | 8.23e-11 | 1.81e-01 | 0.1287 |
100128881 | VPS9D1-AS1 | P26T-E | Human | Esophagus | ESCC | 3.34e-13 | 2.78e-01 | 0.1276 |
100128881 | VPS9D1-AS1 | P27T-E | Human | Esophagus | ESCC | 1.28e-06 | 1.44e-01 | 0.1055 |
100128881 | VPS9D1-AS1 | P28T-E | Human | Esophagus | ESCC | 4.12e-25 | 5.45e-01 | 0.1149 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Oral cavity | OSCC | ![]() |
Oral cavity | LP | ![]() |
Oral cavity | EOLP | ![]() |
Oral cavity | NEOLP | ![]() |
Esophagus | HGIN | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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