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Gene: LINC02027 |
Gene summary for LINC02027 |
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Gene information | Species | Human | Gene symbol | LINC02027 | Gene ID | 728290 |
Gene name | long intergenic non-protein coding RNA 2027 | |
Gene Alias | LINC02027 | |
Cytomap | 3p12.2 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
728290 | LINC02027 | HTA11_3410_2000001011 | Human | Colorectum | AD | 3.49e-19 | 3.67e-01 | 0.0155 |
728290 | LINC02027 | HTA11_2487_2000001011 | Human | Colorectum | SER | 2.43e-18 | 4.17e-01 | -0.1808 |
728290 | LINC02027 | HTA11_2951_2000001011 | Human | Colorectum | AD | 2.17e-09 | 4.89e-01 | 0.0216 |
728290 | LINC02027 | HTA11_1938_2000001011 | Human | Colorectum | AD | 2.59e-26 | 6.32e-01 | -0.0811 |
728290 | LINC02027 | HTA11_78_2000001011 | Human | Colorectum | AD | 1.84e-03 | 1.21e-01 | -0.1088 |
728290 | LINC02027 | HTA11_347_2000001011 | Human | Colorectum | AD | 3.56e-12 | 2.86e-01 | -0.1954 |
728290 | LINC02027 | HTA11_411_2000001011 | Human | Colorectum | SER | 4.01e-04 | 2.93e-01 | -0.2602 |
728290 | LINC02027 | HTA11_2112_2000001011 | Human | Colorectum | SER | 1.08e-06 | 3.95e-01 | -0.2196 |
728290 | LINC02027 | HTA11_3361_2000001011 | Human | Colorectum | AD | 5.46e-22 | 5.27e-01 | -0.1207 |
728290 | LINC02027 | HTA11_83_2000001011 | Human | Colorectum | SER | 1.60e-14 | 4.30e-01 | -0.1526 |
728290 | LINC02027 | HTA11_696_2000001011 | Human | Colorectum | AD | 6.22e-41 | 7.06e-01 | -0.1464 |
728290 | LINC02027 | HTA11_866_2000001011 | Human | Colorectum | AD | 7.63e-19 | 3.58e-01 | -0.1001 |
728290 | LINC02027 | HTA11_1391_2000001011 | Human | Colorectum | AD | 2.00e-27 | 5.72e-01 | -0.059 |
728290 | LINC02027 | HTA11_2992_2000001011 | Human | Colorectum | SER | 1.79e-16 | 6.40e-01 | -0.1706 |
728290 | LINC02027 | HTA11_5212_2000001011 | Human | Colorectum | AD | 2.13e-20 | 6.83e-01 | -0.2061 |
728290 | LINC02027 | HTA11_5216_2000001011 | Human | Colorectum | SER | 4.83e-22 | 1.03e+00 | -0.1462 |
728290 | LINC02027 | HTA11_546_2000001011 | Human | Colorectum | AD | 1.43e-09 | 4.14e-01 | -0.0842 |
728290 | LINC02027 | HTA11_866_3004761011 | Human | Colorectum | AD | 2.51e-02 | 9.33e-02 | 0.096 |
728290 | LINC02027 | HTA11_7663_2000001011 | Human | Colorectum | SER | 6.70e-11 | 4.30e-01 | 0.0131 |
728290 | LINC02027 | HTA11_7696_3000711011 | Human | Colorectum | AD | 3.85e-03 | 1.21e-01 | 0.0674 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Oral cavity | OSCC | ![]() |
Oral cavity | LP | ![]() |
Oral cavity | EOLP | ![]() |
Oral cavity | NEOLP | ![]() |
Esophagus | HGIN | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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