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Gene: LINC00839 |
Gene summary for LINC00839 |
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Gene information | Species | Human | Gene symbol | LINC00839 | Gene ID | 84856 |
Gene name | long intergenic non-protein coding RNA 839 | |
Gene Alias | LINC00839 | |
Cytomap | 10q11.21 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
84856 | LINC00839 | LZE22T | Human | Esophagus | ESCC | 4.30e-03 | 2.36e-01 | 0.068 |
84856 | LINC00839 | P2T-E | Human | Esophagus | ESCC | 3.22e-24 | 4.57e-01 | 0.1177 |
84856 | LINC00839 | P4T-E | Human | Esophagus | ESCC | 1.00e-05 | 9.25e-02 | 0.1323 |
84856 | LINC00839 | P5T-E | Human | Esophagus | ESCC | 7.73e-06 | 1.53e-01 | 0.1327 |
84856 | LINC00839 | P11T-E | Human | Esophagus | ESCC | 2.28e-08 | 3.47e-01 | 0.1426 |
84856 | LINC00839 | P12T-E | Human | Esophagus | ESCC | 1.02e-06 | 9.65e-02 | 0.1122 |
84856 | LINC00839 | P16T-E | Human | Esophagus | ESCC | 9.67e-18 | 2.49e-01 | 0.1153 |
84856 | LINC00839 | P19T-E | Human | Esophagus | ESCC | 2.91e-03 | 2.01e-01 | 0.1662 |
84856 | LINC00839 | P20T-E | Human | Esophagus | ESCC | 9.13e-11 | 3.31e-01 | 0.1124 |
84856 | LINC00839 | P21T-E | Human | Esophagus | ESCC | 1.75e-15 | 2.65e-01 | 0.1617 |
84856 | LINC00839 | P22T-E | Human | Esophagus | ESCC | 1.06e-04 | 1.20e-01 | 0.1236 |
84856 | LINC00839 | P23T-E | Human | Esophagus | ESCC | 4.75e-13 | 5.83e-01 | 0.108 |
84856 | LINC00839 | P24T-E | Human | Esophagus | ESCC | 1.99e-04 | 1.30e-01 | 0.1287 |
84856 | LINC00839 | P26T-E | Human | Esophagus | ESCC | 1.69e-11 | 2.54e-01 | 0.1276 |
84856 | LINC00839 | P27T-E | Human | Esophagus | ESCC | 2.20e-17 | 2.79e-01 | 0.1055 |
84856 | LINC00839 | P28T-E | Human | Esophagus | ESCC | 1.99e-05 | 9.22e-02 | 0.1149 |
84856 | LINC00839 | P32T-E | Human | Esophagus | ESCC | 5.03e-14 | 2.84e-01 | 0.1666 |
84856 | LINC00839 | P36T-E | Human | Esophagus | ESCC | 3.78e-11 | 1.92e-01 | 0.1187 |
84856 | LINC00839 | P37T-E | Human | Esophagus | ESCC | 1.14e-17 | 2.68e-01 | 0.1371 |
84856 | LINC00839 | P40T-E | Human | Esophagus | ESCC | 3.04e-16 | 5.54e-01 | 0.109 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Oral cavity | OSCC | ![]() |
Oral cavity | LP | ![]() |
Oral cavity | EOLP | ![]() |
Oral cavity | NEOLP | ![]() |
Esophagus | HGIN | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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