![]() |
|||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Gene: SNHG29 |
Gene summary for SNHG29 |
![]() |
Gene information | Species | Human | Gene symbol | SNHG29 | Gene ID | 125144 |
Gene name | small nucleolar RNA host gene 29 | |
Gene Alias | C17orf45 | |
Cytomap | 17p11.2 | |
Gene Type | ncRNA | GO ID | GO:0006139 | UniProtAcc | NA |
Top |
Malignant transformation analysis |
![]() |
![]() |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
125144 | SNHG29 | CCI_1 | Human | Cervix | CC | 1.14e-10 | 4.71e-01 | 0.528 |
125144 | SNHG29 | CCI_2 | Human | Cervix | CC | 1.21e-16 | 6.36e-01 | 0.5249 |
125144 | SNHG29 | CCI_3 | Human | Cervix | CC | 3.64e-03 | 1.65e-01 | 0.516 |
125144 | SNHG29 | sample1 | Human | Cervix | CC | 1.14e-38 | 9.70e-01 | 0.0959 |
125144 | SNHG29 | sample3 | Human | Cervix | CC | 5.14e-108 | 1.15e+00 | 0.1387 |
125144 | SNHG29 | H2 | Human | Cervix | HSIL_HPV | 7.97e-66 | 1.15e+00 | 0.0632 |
125144 | SNHG29 | L1 | Human | Cervix | CC | 1.09e-25 | 7.92e-01 | 0.0802 |
125144 | SNHG29 | T1 | Human | Cervix | CC | 1.21e-52 | 9.10e-01 | 0.0918 |
125144 | SNHG29 | T2 | Human | Cervix | CC | 1.17e-49 | 1.41e+00 | 0.0709 |
125144 | SNHG29 | T3 | Human | Cervix | CC | 1.14e-102 | 1.16e+00 | 0.1389 |
125144 | SNHG29 | AEH-subject1 | Human | Endometrium | AEH | 2.97e-64 | 1.04e+00 | -0.3059 |
125144 | SNHG29 | AEH-subject2 | Human | Endometrium | AEH | 1.61e-55 | 1.09e+00 | -0.2525 |
125144 | SNHG29 | AEH-subject3 | Human | Endometrium | AEH | 4.45e-69 | 1.20e+00 | -0.2576 |
125144 | SNHG29 | AEH-subject4 | Human | Endometrium | AEH | 1.05e-47 | 1.03e+00 | -0.2657 |
125144 | SNHG29 | AEH-subject5 | Human | Endometrium | AEH | 1.26e-69 | 1.17e+00 | -0.2953 |
125144 | SNHG29 | EEC-subject1 | Human | Endometrium | EEC | 1.98e-93 | 1.45e+00 | -0.2682 |
125144 | SNHG29 | EEC-subject2 | Human | Endometrium | EEC | 1.52e-73 | 1.15e+00 | -0.2607 |
125144 | SNHG29 | EEC-subject3 | Human | Endometrium | EEC | 1.45e-37 | 8.37e-01 | -0.2525 |
125144 | SNHG29 | EEC-subject4 | Human | Endometrium | EEC | 6.57e-67 | 1.07e+00 | -0.2571 |
125144 | SNHG29 | EEC-subject5 | Human | Endometrium | EEC | 8.85e-65 | 1.14e+00 | -0.249 |
Page: 1 2 3 4 5 6 7 8 |
![]() |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
![]() |
![]() |
Tissue | Disease Stage | Enriched GO biological Processes |
Stomach | WIM | ![]() |
Stomach | SIM | ![]() |
Liver | NAFLD | ![]() |
Liver | Cirrhotic | ![]() |
Liver | HCC | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
![]() |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
Page: 1 |
![]() |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
Top |
Cell-cell communication analysis |
![]() |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
![]() |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
![]() |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
Top |
Related drugs of malignant transformation related genes |
![]() |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
Page: 1 |