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Gene: LINC02476 |
Gene summary for LINC02476 |
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Gene information | Species | Human | Gene symbol | LINC02476 | Gene ID | 105375475 |
Gene name | long intergenic non-protein coding RNA 2476 | |
Gene Alias | LVCAT5 | |
Cytomap | 7q31.31 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
105375475 | LINC02476 | S014 | Human | Liver | HCC | 2.44e-09 | 3.07e-01 | 0.2254 |
105375475 | LINC02476 | S015 | Human | Liver | HCC | 6.34e-19 | 8.04e-01 | 0.2375 |
105375475 | LINC02476 | S016 | Human | Liver | HCC | 2.17e-25 | 6.27e-01 | 0.2243 |
105375475 | LINC02476 | ATC09 | Human | Thyroid | ATC | 4.52e-12 | 3.80e-01 | 0.2871 |
105375475 | LINC02476 | ATC12 | Human | Thyroid | ATC | 7.40e-31 | 5.79e-01 | 0.34 |
105375475 | LINC02476 | ATC1 | Human | Thyroid | ATC | 8.56e-13 | 4.24e-01 | 0.2878 |
105375475 | LINC02476 | ATC4 | Human | Thyroid | ATC | 1.32e-34 | 6.85e-01 | 0.34 |
105375475 | LINC02476 | ATC5 | Human | Thyroid | ATC | 2.56e-04 | 1.00e-01 | 0.34 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Stomach | WIM | ![]() |
Stomach | SIM | ![]() |
Liver | NAFLD | ![]() |
Liver | Cirrhotic | ![]() |
Liver | HCC | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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