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Gene: CDYL |
Gene summary for CDYL |
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Gene information | Species | Human | Gene symbol | CDYL | Gene ID | 9425 |
Gene name | chromodomain Y like | |
Gene Alias | CDYL1 | |
Cytomap | 6p25.1 | |
Gene Type | protein-coding | GO ID | GO:0000003 | UniProtAcc | Q9Y232 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
9425 | CDYL | CCI_1 | Human | Cervix | CC | 2.34e-09 | 1.19e+00 | 0.528 |
9425 | CDYL | CCI_2 | Human | Cervix | CC | 3.63e-04 | 8.60e-01 | 0.5249 |
9425 | CDYL | CCI_3 | Human | Cervix | CC | 6.10e-13 | 1.03e+00 | 0.516 |
9425 | CDYL | HTA11_3410_2000001011 | Human | Colorectum | AD | 1.81e-22 | -7.32e-01 | 0.0155 |
9425 | CDYL | HTA11_2487_2000001011 | Human | Colorectum | SER | 6.46e-03 | -4.87e-01 | -0.1808 |
9425 | CDYL | HTA11_2951_2000001011 | Human | Colorectum | AD | 2.69e-02 | -7.56e-01 | 0.0216 |
9425 | CDYL | HTA11_3361_2000001011 | Human | Colorectum | AD | 6.10e-09 | -6.69e-01 | -0.1207 |
9425 | CDYL | HTA11_696_2000001011 | Human | Colorectum | AD | 6.19e-09 | -4.04e-01 | -0.1464 |
9425 | CDYL | HTA11_866_2000001011 | Human | Colorectum | AD | 2.52e-15 | -4.93e-01 | -0.1001 |
9425 | CDYL | HTA11_7862_2000001011 | Human | Colorectum | AD | 2.78e-02 | -5.90e-01 | -0.0179 |
9425 | CDYL | HTA11_866_3004761011 | Human | Colorectum | AD | 4.96e-21 | -7.29e-01 | 0.096 |
9425 | CDYL | HTA11_9408_2000001011 | Human | Colorectum | AD | 3.43e-02 | -8.18e-01 | 0.0451 |
9425 | CDYL | HTA11_8622_2000001021 | Human | Colorectum | SER | 9.72e-04 | -7.11e-01 | 0.0528 |
9425 | CDYL | HTA11_10711_2000001011 | Human | Colorectum | AD | 2.20e-07 | -6.33e-01 | 0.0338 |
9425 | CDYL | HTA11_7696_3000711011 | Human | Colorectum | AD | 9.48e-24 | -6.31e-01 | 0.0674 |
9425 | CDYL | HTA11_6818_2000001021 | Human | Colorectum | AD | 1.52e-08 | -6.35e-01 | 0.0588 |
9425 | CDYL | HTA11_99999970781_79442 | Human | Colorectum | MSS | 9.66e-11 | -4.44e-01 | 0.294 |
9425 | CDYL | HTA11_99999971662_82457 | Human | Colorectum | MSS | 1.81e-15 | -4.94e-01 | 0.3859 |
9425 | CDYL | HTA11_99999973899_84307 | Human | Colorectum | MSS | 4.09e-05 | -6.44e-01 | 0.2585 |
9425 | CDYL | HTA11_99999974143_84620 | Human | Colorectum | MSS | 3.81e-28 | -7.15e-01 | 0.3005 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Stomach | WIM | ![]() |
Stomach | SIM | ![]() |
Liver | NAFLD | ![]() |
Liver | Cirrhotic | ![]() |
Liver | HCC | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:004354313 | Esophagus | ESCC | protein acylation | 165/8552 | 243/18723 | 1.69e-12 | 7.14e-11 | 165 |
GO:00400295 | Esophagus | ESCC | regulation of gene expression, epigenetic | 74/8552 | 105/18723 | 2.24e-07 | 3.42e-06 | 74 |
GO:00090484 | Esophagus | ESCC | dosage compensation by inactivation of X chromosome | 14/8552 | 16/18723 | 6.78e-04 | 3.56e-03 | 14 |
GO:00075494 | Esophagus | ESCC | dosage compensation | 14/8552 | 18/18723 | 5.77e-03 | 2.14e-02 | 14 |
GO:0043543 | Liver | NAFLD | protein acylation | 43/1882 | 243/18723 | 1.70e-04 | 3.07e-03 | 43 |
GO:00435432 | Liver | HCC | protein acylation | 157/7958 | 243/18723 | 2.40e-12 | 1.12e-10 | 157 |
GO:0040029 | Liver | HCC | regulation of gene expression, epigenetic | 61/7958 | 105/18723 | 9.02e-04 | 5.31e-03 | 61 |
GO:0009048 | Liver | HCC | dosage compensation by inactivation of X chromosome | 13/7958 | 16/18723 | 1.84e-03 | 9.42e-03 | 13 |
GO:0007549 | Liver | HCC | dosage compensation | 13/7958 | 18/18723 | 1.05e-02 | 3.89e-02 | 13 |
GO:00435434 | Oral cavity | OSCC | protein acylation | 149/7305 | 243/18723 | 1.33e-12 | 5.80e-11 | 149 |
GO:00400294 | Oral cavity | OSCC | regulation of gene expression, epigenetic | 59/7305 | 105/18723 | 2.62e-04 | 1.68e-03 | 59 |
GO:00090483 | Oral cavity | OSCC | dosage compensation by inactivation of X chromosome | 13/7305 | 16/18723 | 7.05e-04 | 3.89e-03 | 13 |
GO:00075493 | Oral cavity | OSCC | dosage compensation | 13/7305 | 18/18723 | 4.45e-03 | 1.79e-02 | 13 |
GO:004354321 | Oral cavity | EOLP | protein acylation | 51/2218 | 243/18723 | 3.11e-05 | 4.41e-04 | 51 |
GO:00400292 | Oral cavity | EOLP | regulation of gene expression, epigenetic | 24/2218 | 105/18723 | 1.07e-03 | 7.87e-03 | 24 |
GO:00090481 | Oral cavity | EOLP | dosage compensation by inactivation of X chromosome | 7/2218 | 16/18723 | 1.40e-03 | 9.58e-03 | 7 |
GO:00075491 | Oral cavity | EOLP | dosage compensation | 7/2218 | 18/18723 | 3.15e-03 | 1.84e-02 | 7 |
GO:00400293 | Oral cavity | NEOLP | regulation of gene expression, epigenetic | 24/2005 | 105/18723 | 2.48e-04 | 2.55e-03 | 24 |
GO:004354331 | Oral cavity | NEOLP | protein acylation | 40/2005 | 243/18723 | 3.85e-03 | 2.21e-02 | 40 |
GO:00090482 | Oral cavity | NEOLP | dosage compensation by inactivation of X chromosome | 6/2005 | 16/18723 | 4.64e-03 | 2.56e-02 | 6 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
CDYL | SNV | Missense_Mutation | novel | c.1542G>T | p.Glu514Asp | p.E514D | Q9Y232 | protein_coding | deleterious(0.03) | benign(0.017) | TCGA-3C-AALI-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Poly E | Complete Response |
CDYL | SNV | Missense_Mutation | novel | c.1285G>A | p.Asp429Asn | p.D429N | Q9Y232 | protein_coding | tolerated(0.14) | possibly_damaging(0.879) | TCGA-A2-A0CT-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | cytoxan | SD |
CDYL | SNV | Missense_Mutation | c.524N>G | p.Asp175Gly | p.D175G | Q9Y232 | protein_coding | tolerated(0.5) | possibly_damaging(0.72) | TCGA-BH-A0DQ-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | SD | |
CDYL | SNV | Missense_Mutation | novel | c.1204N>G | p.Ile402Val | p.I402V | Q9Y232 | protein_coding | tolerated(0.06) | benign(0.072) | TCGA-BH-A42T-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
CDYL | SNV | Missense_Mutation | c.923N>T | p.Ser308Leu | p.S308L | Q9Y232 | protein_coding | deleterious(0) | possibly_damaging(0.571) | TCGA-GM-A2DD-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | fluorouracil | CR | |
CDYL | deletion | Frame_Shift_Del | novel | c.675delN | p.Ala226LeufsTer14 | p.A226Lfs*14 | Q9Y232 | protein_coding | TCGA-D8-A27V-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Hormone Therapy | tamoxiphen | SD | ||
CDYL | deletion | Frame_Shift_Del | novel | c.1354delN | p.Gly452AspfsTer4 | p.G452Dfs*4 | Q9Y232 | protein_coding | TCGA-EW-A2FV-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | docetaxel | SD | ||
CDYL | SNV | Missense_Mutation | rs370584550 | c.1463N>T | p.Ser488Leu | p.S488L | Q9Y232 | protein_coding | tolerated(0.12) | benign(0.047) | TCGA-A6-6781-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | oxaliplatin | SD |
CDYL | SNV | Missense_Mutation | c.149N>A | p.Ser50Asn | p.S50N | Q9Y232 | protein_coding | deleterious_low_confidence(0.03) | benign(0) | TCGA-AA-3713-01 | Colorectum | colon adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | 5-fluorouracil | PR | |
CDYL | SNV | Missense_Mutation | c.999N>A | p.Ser333Arg | p.S333R | Q9Y232 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AA-3864-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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