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Gene: LINC01411 |
Gene summary for LINC01411 |
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Gene information | Species | Human | Gene symbol | LINC01411 | Gene ID | 101928176 |
Gene name | long intergenic non-protein coding RNA 1411 | |
Gene Alias | LINC01411 | |
Cytomap | 5q35.2 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
101928176 | LINC01411 | HTA11_3410_2000001011 | Human | Colorectum | AD | 1.51e-03 | 1.23e-01 | 0.0155 |
101928176 | LINC01411 | HTA11_1938_2000001011 | Human | Colorectum | AD | 1.23e-05 | 2.26e-01 | -0.0811 |
101928176 | LINC01411 | HTA11_1391_2000001011 | Human | Colorectum | AD | 5.65e-19 | 6.70e-01 | -0.059 |
101928176 | LINC01411 | HTA11_866_3004761011 | Human | Colorectum | AD | 6.26e-04 | 1.54e-01 | 0.096 |
101928176 | LINC01411 | HTA11_10711_2000001011 | Human | Colorectum | AD | 5.13e-08 | 3.06e-01 | 0.0338 |
101928176 | LINC01411 | HTA11_7696_3000711011 | Human | Colorectum | AD | 9.36e-06 | 1.35e-01 | 0.0674 |
101928176 | LINC01411 | HTA11_6818_2000001011 | Human | Colorectum | AD | 1.74e-03 | 1.76e-01 | 0.0112 |
101928176 | LINC01411 | HTA11_6818_2000001021 | Human | Colorectum | AD | 2.64e-03 | 1.65e-01 | 0.0588 |
101928176 | LINC01411 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 8.85e-25 | 5.76e-01 | 0.294 |
101928176 | LINC01411 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 1.92e-35 | 7.46e-01 | 0.3859 |
101928176 | LINC01411 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 3.49e-32 | 6.39e-01 | 0.3005 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | CRC | ![]() |
Stomach | GC | ![]() |
Stomach | CAG with IM | ![]() |
Stomach | CSG | ![]() |
Stomach | CAG | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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