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Gene: LINC00571 |
Gene summary for LINC00571 |
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Gene information | Species | Human | Gene symbol | LINC00571 | Gene ID | 100874188 |
Gene name | long intergenic non-protein coding RNA 571 | |
Gene Alias | LINC00571 | |
Cytomap | 13q13.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
100874188 | LINC00571 | RNA-P10T2-P10T2-3 | Human | Lung | AAH | 1.22e-02 | 6.23e-01 | -0.1408 |
100874188 | LINC00571 | RNA-P25T1-P25T1-1 | Human | Lung | AIS | 5.21e-20 | 8.36e-01 | -0.2116 |
100874188 | LINC00571 | RNA-P25T1-P25T1-2 | Human | Lung | AIS | 1.98e-07 | 7.52e-01 | -0.1941 |
100874188 | LINC00571 | RNA-P25T1-P25T1-3 | Human | Lung | AIS | 9.50e-11 | 7.75e-01 | -0.2107 |
100874188 | LINC00571 | RNA-P25T1-P25T1-4 | Human | Lung | AIS | 3.10e-17 | 7.37e-01 | -0.2119 |
100874188 | LINC00571 | RNA-P6T1-P6T1-2 | Human | Lung | MIAC | 4.12e-03 | 6.64e-01 | -0.0186 |
100874188 | LINC00571 | RNA-P6T2-P6T2-1 | Human | Lung | IAC | 9.94e-07 | 2.92e-01 | -0.0166 |
100874188 | LINC00571 | RNA-P6T2-P6T2-2 | Human | Lung | IAC | 1.22e-08 | 3.25e-01 | -0.0132 |
100874188 | LINC00571 | RNA-P6T2-P6T2-3 | Human | Lung | IAC | 7.68e-08 | 2.80e-01 | -0.013 |
100874188 | LINC00571 | RNA-P6T2-P6T2-4 | Human | Lung | IAC | 5.32e-06 | 2.52e-01 | -0.0121 |
100874188 | LINC00571 | RNA-P7T1-P7T1-3 | Human | Lung | AIS | 1.74e-03 | 4.57e-01 | -0.0822 |
100874188 | LINC00571 | RNA-P8T2-P8T2-4 | Human | Lung | AIS | 2.49e-02 | 7.25e-01 | -0.1197 |
100874188 | LINC00571 | 047563_1562-all-cells | Human | Prostate | BPH | 1.87e-13 | 4.77e-01 | 0.0791 |
100874188 | LINC00571 | 048752_1579-all-cells | Human | Prostate | BPH | 3.04e-72 | 1.06e+00 | 0.1008 |
100874188 | LINC00571 | 052095_1628-all-cells | Human | Prostate | BPH | 5.34e-40 | 6.60e-01 | 0.1032 |
100874188 | LINC00571 | 052097_1595-all-cells | Human | Prostate | BPH | 3.08e-52 | 9.62e-01 | 0.0972 |
100874188 | LINC00571 | 052099_1652-all-cells | Human | Prostate | BPH | 4.33e-49 | 9.35e-01 | 0.1038 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | CRC | ![]() |
Stomach | GC | ![]() |
Stomach | CAG with IM | ![]() |
Stomach | CSG | ![]() |
Stomach | CAG | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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