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Gene: THUMPD3-AS1 |
Gene summary for THUMPD3-AS1 |
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Gene information | Species | Human | Gene symbol | THUMPD3-AS1 | Gene ID | 440944 |
Gene name | THUMPD3 antisense RNA 1 | |
Gene Alias | SETD5-AS1 | |
Cytomap | 3p25.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
440944 | THUMPD3-AS1 | RNA-P6T2-P6T2-2 | Human | Lung | IAC | 1.02e-19 | 6.49e-01 | -0.0132 |
440944 | THUMPD3-AS1 | RNA-P6T2-P6T2-3 | Human | Lung | IAC | 5.47e-24 | 7.31e-01 | -0.013 |
440944 | THUMPD3-AS1 | RNA-P6T2-P6T2-4 | Human | Lung | IAC | 1.29e-16 | 6.22e-01 | -0.0121 |
440944 | THUMPD3-AS1 | C04 | Human | Oral cavity | OSCC | 1.50e-25 | 1.12e+00 | 0.2633 |
440944 | THUMPD3-AS1 | C21 | Human | Oral cavity | OSCC | 1.38e-27 | 9.89e-01 | 0.2678 |
440944 | THUMPD3-AS1 | C30 | Human | Oral cavity | OSCC | 1.81e-09 | 5.63e-01 | 0.3055 |
440944 | THUMPD3-AS1 | C46 | Human | Oral cavity | OSCC | 2.05e-30 | 8.26e-01 | 0.1673 |
440944 | THUMPD3-AS1 | C51 | Human | Oral cavity | OSCC | 3.19e-03 | 3.35e-01 | 0.2674 |
440944 | THUMPD3-AS1 | C57 | Human | Oral cavity | OSCC | 5.99e-28 | 9.59e-01 | 0.1679 |
440944 | THUMPD3-AS1 | C08 | Human | Oral cavity | OSCC | 7.90e-13 | 3.59e-01 | 0.1919 |
440944 | THUMPD3-AS1 | C09 | Human | Oral cavity | OSCC | 3.30e-10 | 4.37e-01 | 0.1431 |
440944 | THUMPD3-AS1 | LN46 | Human | Oral cavity | OSCC | 1.54e-12 | 5.54e-01 | 0.1666 |
440944 | THUMPD3-AS1 | LP15 | Human | Oral cavity | LP | 9.40e-04 | 1.01e+00 | 0.2174 |
440944 | THUMPD3-AS1 | SYSMH1 | Human | Oral cavity | OSCC | 3.57e-03 | 1.74e-01 | 0.1127 |
440944 | THUMPD3-AS1 | SYSMH2 | Human | Oral cavity | OSCC | 4.88e-13 | 4.85e-01 | 0.2326 |
440944 | THUMPD3-AS1 | SYSMH3 | Human | Oral cavity | OSCC | 1.39e-31 | 9.43e-01 | 0.2442 |
440944 | THUMPD3-AS1 | SYSMH4 | Human | Oral cavity | OSCC | 1.84e-13 | 4.82e-01 | 0.1226 |
440944 | THUMPD3-AS1 | SYSMH5 | Human | Oral cavity | OSCC | 1.68e-06 | 2.48e-01 | 0.0647 |
440944 | THUMPD3-AS1 | SYSMH6 | Human | Oral cavity | OSCC | 9.46e-29 | 9.56e-01 | 0.1275 |
440944 | THUMPD3-AS1 | HTA12-15-2 | Human | Pancreas | PDAC | 1.18e-05 | 4.86e-01 | 0.2315 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
Page: 1 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
Page: 1 |