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Gene: RPS23 |
Gene summary for RPS23 |
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Gene information | Species | Human | Gene symbol | RPS23 | Gene ID | 6228 |
Gene name | ribosomal protein S23 | |
Gene Alias | BTDD | |
Cytomap | 5q14.2 | |
Gene Type | protein-coding | GO ID | GO:0002181 | UniProtAcc | A8K517 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
6228 | RPS23 | P57T-E | Human | Esophagus | ESCC | 1.28e-94 | 3.46e+00 | 0.0926 |
6228 | RPS23 | P61T-E | Human | Esophagus | ESCC | 3.02e-61 | 3.08e+00 | 0.099 |
6228 | RPS23 | P62T-E | Human | Esophagus | ESCC | 3.92e-100 | 4.75e+00 | 0.1302 |
6228 | RPS23 | P65T-E | Human | Esophagus | ESCC | 2.21e-75 | 2.90e+00 | 0.0978 |
6228 | RPS23 | P74T-E | Human | Esophagus | ESCC | 8.02e-70 | 4.53e+00 | 0.1479 |
6228 | RPS23 | P75T-E | Human | Esophagus | ESCC | 1.55e-86 | 4.46e+00 | 0.1125 |
6228 | RPS23 | P76T-E | Human | Esophagus | ESCC | 1.82e-95 | 3.91e+00 | 0.1207 |
6228 | RPS23 | P79T-E | Human | Esophagus | ESCC | 1.76e-91 | 3.64e+00 | 0.1154 |
6228 | RPS23 | P80T-E | Human | Esophagus | ESCC | 9.74e-78 | 5.43e+00 | 0.155 |
6228 | RPS23 | P82T-E | Human | Esophagus | ESCC | 1.13e-34 | 4.11e+00 | 0.1072 |
6228 | RPS23 | P83T-E | Human | Esophagus | ESCC | 7.67e-102 | 5.32e+00 | 0.1738 |
6228 | RPS23 | P84T-E | Human | Esophagus | ESCC | 2.32e-21 | 2.93e+00 | 0.0933 |
6228 | RPS23 | P89T-E | Human | Esophagus | ESCC | 2.72e-52 | 5.34e+00 | 0.1752 |
6228 | RPS23 | P91T-E | Human | Esophagus | ESCC | 6.11e-44 | 5.53e+00 | 0.1828 |
6228 | RPS23 | P94T-E | Human | Esophagus | ESCC | 1.46e-15 | 3.88e+00 | 0.0879 |
6228 | RPS23 | P104T-E | Human | Esophagus | ESCC | 1.55e-08 | 3.46e+00 | 0.0931 |
6228 | RPS23 | P107T-E | Human | Esophagus | ESCC | 3.35e-85 | 5.99e+00 | 0.171 |
6228 | RPS23 | P126T-E | Human | Esophagus | ESCC | 5.78e-24 | 3.99e+00 | 0.1125 |
6228 | RPS23 | P127T-E | Human | Esophagus | ESCC | 1.08e-66 | 2.67e+00 | 0.0826 |
6228 | RPS23 | P128T-E | Human | Esophagus | ESCC | 3.12e-71 | 4.15e+00 | 0.1241 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00021819 | Breast | Precancer | cytoplasmic translation | 80/1080 | 148/18723 | 1.59e-59 | 8.54e-56 | 80 |
GO:00340635 | Breast | Precancer | stress granule assembly | 6/1080 | 26/18723 | 3.09e-03 | 2.62e-02 | 6 |
GO:000218114 | Breast | IDC | cytoplasmic translation | 82/1434 | 148/18723 | 2.60e-52 | 1.48e-48 | 82 |
GO:000218124 | Breast | DCIS | cytoplasmic translation | 82/1390 | 148/18723 | 2.21e-53 | 1.25e-49 | 82 |
GO:000218110 | Cervix | CC | cytoplasmic translation | 96/2311 | 148/18723 | 4.87e-51 | 2.91e-47 | 96 |
GO:000218115 | Cervix | HSIL_HPV | cytoplasmic translation | 86/737 | 148/18723 | 3.97e-82 | 1.91e-78 | 86 |
GO:0002181 | Colorectum | AD | cytoplasmic translation | 109/3918 | 148/18723 | 3.40e-43 | 2.13e-39 | 109 |
GO:00021812 | Colorectum | MSS | cytoplasmic translation | 108/3467 | 148/18723 | 1.78e-47 | 1.11e-43 | 108 |
GO:00021814 | Colorectum | FAP | cytoplasmic translation | 76/2622 | 148/18723 | 3.31e-27 | 2.03e-23 | 76 |
GO:0034063 | Colorectum | FAP | stress granule assembly | 10/2622 | 26/18723 | 1.77e-03 | 1.53e-02 | 10 |
GO:000218116 | Endometrium | AEH | cytoplasmic translation | 104/2100 | 148/18723 | 1.01e-64 | 6.07e-61 | 104 |
GO:000218117 | Endometrium | EEC | cytoplasmic translation | 104/2168 | 148/18723 | 2.53e-63 | 1.52e-59 | 104 |
GO:000218127 | Esophagus | HGIN | cytoplasmic translation | 108/2587 | 148/18723 | 1.70e-60 | 1.02e-56 | 108 |
GO:00340638 | Esophagus | HGIN | stress granule assembly | 10/2587 | 26/18723 | 1.60e-03 | 1.79e-02 | 10 |
GO:0002181111 | Esophagus | ESCC | cytoplasmic translation | 135/8552 | 148/18723 | 4.17e-32 | 2.65e-29 | 135 |
GO:003406315 | Esophagus | ESCC | stress granule assembly | 23/8552 | 26/18723 | 6.82e-06 | 6.90e-05 | 23 |
GO:00021817 | Liver | NAFLD | cytoplasmic translation | 93/1882 | 148/18723 | 1.44e-55 | 8.41e-52 | 93 |
GO:00340633 | Liver | NAFLD | stress granule assembly | 9/1882 | 26/18723 | 6.56e-04 | 8.50e-03 | 9 |
GO:000218112 | Liver | Cirrhotic | cytoplasmic translation | 120/4634 | 148/18723 | 2.95e-47 | 1.85e-43 | 120 |
GO:003406311 | Liver | Cirrhotic | stress granule assembly | 18/4634 | 26/18723 | 2.21e-06 | 4.10e-05 | 18 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0301018 | Breast | Precancer | Ribosome | 80/684 | 167/8465 | 7.33e-44 | 2.32e-41 | 1.77e-41 | 80 |
hsa0517118 | Breast | Precancer | Coronavirus disease - COVID-19 | 81/684 | 232/8465 | 3.74e-32 | 2.36e-30 | 1.81e-30 | 81 |
hsa0301019 | Breast | Precancer | Ribosome | 80/684 | 167/8465 | 7.33e-44 | 2.32e-41 | 1.77e-41 | 80 |
hsa0517119 | Breast | Precancer | Coronavirus disease - COVID-19 | 81/684 | 232/8465 | 3.74e-32 | 2.36e-30 | 1.81e-30 | 81 |
hsa0301024 | Breast | IDC | Ribosome | 83/867 | 167/8465 | 6.07e-39 | 9.87e-37 | 7.38e-37 | 83 |
hsa0517124 | Breast | IDC | Coronavirus disease - COVID-19 | 86/867 | 232/8465 | 1.50e-28 | 9.72e-27 | 7.27e-27 | 86 |
hsa0301034 | Breast | IDC | Ribosome | 83/867 | 167/8465 | 6.07e-39 | 9.87e-37 | 7.38e-37 | 83 |
hsa0517134 | Breast | IDC | Coronavirus disease - COVID-19 | 86/867 | 232/8465 | 1.50e-28 | 9.72e-27 | 7.27e-27 | 86 |
hsa0301044 | Breast | DCIS | Ribosome | 82/846 | 167/8465 | 8.69e-39 | 1.40e-36 | 1.03e-36 | 82 |
hsa0517144 | Breast | DCIS | Coronavirus disease - COVID-19 | 86/846 | 232/8465 | 2.42e-29 | 1.56e-27 | 1.15e-27 | 86 |
hsa0301054 | Breast | DCIS | Ribosome | 82/846 | 167/8465 | 8.69e-39 | 1.40e-36 | 1.03e-36 | 82 |
hsa0517154 | Breast | DCIS | Coronavirus disease - COVID-19 | 86/846 | 232/8465 | 2.42e-29 | 1.56e-27 | 1.15e-27 | 86 |
hsa0517120 | Cervix | CC | Coronavirus disease - COVID-19 | 111/1267 | 232/8465 | 1.82e-33 | 5.90e-31 | 3.49e-31 | 111 |
hsa0301020 | Cervix | CC | Ribosome | 85/1267 | 167/8465 | 3.17e-28 | 5.14e-26 | 3.04e-26 | 85 |
hsa05171110 | Cervix | CC | Coronavirus disease - COVID-19 | 111/1267 | 232/8465 | 1.82e-33 | 5.90e-31 | 3.49e-31 | 111 |
hsa03010110 | Cervix | CC | Ribosome | 85/1267 | 167/8465 | 3.17e-28 | 5.14e-26 | 3.04e-26 | 85 |
hsa0301025 | Cervix | HSIL_HPV | Ribosome | 80/459 | 167/8465 | 9.61e-58 | 2.82e-55 | 2.28e-55 | 80 |
hsa0517125 | Cervix | HSIL_HPV | Coronavirus disease - COVID-19 | 91/459 | 232/8465 | 2.14e-56 | 3.13e-54 | 2.53e-54 | 91 |
hsa0301035 | Cervix | HSIL_HPV | Ribosome | 80/459 | 167/8465 | 9.61e-58 | 2.82e-55 | 2.28e-55 | 80 |
hsa0517135 | Cervix | HSIL_HPV | Coronavirus disease - COVID-19 | 91/459 | 232/8465 | 2.14e-56 | 3.13e-54 | 2.53e-54 | 91 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RPS23 | SNV | Missense_Mutation | rs772924662 | c.98N>A | p.Gly33Asp | p.G33D | P62266 | protein_coding | tolerated(0.06) | possibly_damaging(0.903) | TCGA-AA-3672-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
RPS23 | SNV | Missense_Mutation | c.233G>A | p.Gly78Asp | p.G78D | P62266 | protein_coding | deleterious(0.01) | benign(0.337) | TCGA-AA-3864-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
RPS23 | SNV | Missense_Mutation | c.116A>C | p.Asn39Thr | p.N39T | P62266 | protein_coding | tolerated(0.05) | benign(0.2) | TCGA-AA-3977-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
RPS23 | SNV | Missense_Mutation | c.253N>T | p.Val85Leu | p.V85L | P62266 | protein_coding | tolerated(0.08) | benign(0.169) | TCGA-AA-A01V-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
RPS23 | SNV | Missense_Mutation | novel | c.88N>A | p.Ala30Thr | p.A30T | P62266 | protein_coding | tolerated(0.23) | benign(0.13) | TCGA-AG-3878-01 | Colorectum | rectum adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
RPS23 | SNV | Missense_Mutation | novel | c.260N>C | p.Asn87Thr | p.N87T | P62266 | protein_coding | tolerated(0.11) | benign(0.05) | TCGA-A5-A2K5-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RPS23 | SNV | Missense_Mutation | novel | c.319N>T | p.Arg107Cys | p.R107C | P62266 | protein_coding | tolerated(0.09) | benign(0.077) | TCGA-EY-A548-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
RPS23 | insertion | Frame_Shift_Ins | novel | c.162dupA | p.Val55SerfsTer4 | p.V55Sfs*4 | P62266 | protein_coding | TCGA-DD-A73G-01 | Liver | liver hepatocellular carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
RPS23 | SNV | Missense_Mutation | novel | c.407N>A | p.Gly136Asp | p.G136D | P62266 | protein_coding | deleterious(0.04) | benign(0.075) | TCGA-CN-6989-01 | Oral cavity | head & neck squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | carboplatin | PD |
RPS23 | insertion | Frame_Shift_Ins | novel | c.322_323insTAAAAAAAGT | p.Lys108IlefsTer10 | p.K108Ifs*10 | P62266 | protein_coding | TCGA-HD-8635-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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