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Gene: EEF1D |
Gene summary for EEF1D |
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Gene information | Species | Human | Gene symbol | EEF1D | Gene ID | 1936 |
Gene name | eukaryotic translation elongation factor 1 delta | |
Gene Alias | EF-1D | |
Cytomap | 8q24.3 | |
Gene Type | protein-coding | GO ID | GO:0006412 | UniProtAcc | B2RAR6 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
1936 | EEF1D | P76T-E | Human | Esophagus | ESCC | 8.58e-92 | 2.76e+00 | 0.1207 |
1936 | EEF1D | P79T-E | Human | Esophagus | ESCC | 3.80e-77 | 2.40e+00 | 0.1154 |
1936 | EEF1D | P80T-E | Human | Esophagus | ESCC | 7.96e-66 | 2.89e+00 | 0.155 |
1936 | EEF1D | P82T-E | Human | Esophagus | ESCC | 6.02e-37 | 3.08e+00 | 0.1072 |
1936 | EEF1D | P83T-E | Human | Esophagus | ESCC | 5.02e-76 | 3.51e+00 | 0.1738 |
1936 | EEF1D | P84T-E | Human | Esophagus | ESCC | 2.89e-27 | 2.27e+00 | 0.0933 |
1936 | EEF1D | P89T-E | Human | Esophagus | ESCC | 2.11e-45 | 3.69e+00 | 0.1752 |
1936 | EEF1D | P91T-E | Human | Esophagus | ESCC | 6.33e-47 | 4.42e+00 | 0.1828 |
1936 | EEF1D | P94T-E | Human | Esophagus | ESCC | 2.00e-11 | 1.73e+00 | 0.0879 |
1936 | EEF1D | P104T-E | Human | Esophagus | ESCC | 7.57e-09 | 1.86e+00 | 0.0931 |
1936 | EEF1D | P107T-E | Human | Esophagus | ESCC | 6.48e-83 | 4.71e+00 | 0.171 |
1936 | EEF1D | P126T-E | Human | Esophagus | ESCC | 3.14e-23 | 3.15e+00 | 0.1125 |
1936 | EEF1D | P127T-E | Human | Esophagus | ESCC | 8.21e-36 | 1.01e+00 | 0.0826 |
1936 | EEF1D | P128T-E | Human | Esophagus | ESCC | 5.38e-80 | 4.19e+00 | 0.1241 |
1936 | EEF1D | P130T-E | Human | Esophagus | ESCC | 1.33e-104 | 3.69e+00 | 0.1676 |
1936 | EEF1D | NAFLD1 | Human | Liver | NAFLD | 3.89e-05 | -8.14e-01 | -0.04 |
1936 | EEF1D | S41 | Human | Liver | Cirrhotic | 1.03e-09 | -1.00e+00 | -0.0343 |
1936 | EEF1D | S42 | Human | Liver | HCC | 3.10e-05 | -8.59e-01 | -0.0103 |
1936 | EEF1D | S43 | Human | Liver | Cirrhotic | 4.55e-28 | -7.53e-01 | -0.0187 |
1936 | EEF1D | S44 | Human | Liver | HCC | 2.26e-03 | -8.43e-01 | -0.0083 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00093148 | Breast | Precancer | response to radiation | 47/1080 | 456/18723 | 8.39e-05 | 1.62e-03 | 47 |
GO:00712147 | Breast | Precancer | cellular response to abiotic stimulus | 37/1080 | 331/18723 | 9.12e-05 | 1.73e-03 | 37 |
GO:01040047 | Breast | Precancer | cellular response to environmental stimulus | 37/1080 | 331/18723 | 9.12e-05 | 1.73e-03 | 37 |
GO:00102125 | Breast | Precancer | response to ionizing radiation | 21/1080 | 148/18723 | 1.19e-04 | 2.13e-03 | 21 |
GO:00714785 | Breast | Precancer | cellular response to radiation | 24/1080 | 186/18723 | 1.83e-04 | 2.96e-03 | 24 |
GO:00714797 | Breast | Precancer | cellular response to ionizing radiation | 13/1080 | 72/18723 | 2.15e-04 | 3.33e-03 | 13 |
GO:00064147 | Breast | Precancer | translational elongation | 10/1080 | 55/18723 | 1.06e-03 | 1.18e-02 | 10 |
GO:00072496 | Breast | Precancer | I-kappaB kinase/NF-kappaB signaling | 27/1080 | 281/18723 | 6.58e-03 | 4.53e-02 | 27 |
GO:007147913 | Breast | IDC | cellular response to ionizing radiation | 18/1434 | 72/18723 | 5.67e-06 | 1.85e-04 | 18 |
GO:001021213 | Breast | IDC | response to ionizing radiation | 28/1434 | 148/18723 | 6.85e-06 | 2.09e-04 | 28 |
GO:000931412 | Breast | IDC | response to radiation | 62/1434 | 456/18723 | 6.91e-06 | 2.10e-04 | 62 |
GO:007121413 | Breast | IDC | cellular response to abiotic stimulus | 48/1434 | 331/18723 | 1.37e-05 | 3.53e-04 | 48 |
GO:010400413 | Breast | IDC | cellular response to environmental stimulus | 48/1434 | 331/18723 | 1.37e-05 | 3.53e-04 | 48 |
GO:007147813 | Breast | IDC | cellular response to radiation | 29/1434 | 186/18723 | 1.91e-04 | 3.15e-03 | 29 |
GO:00431227 | Breast | IDC | regulation of I-kappaB kinase/NF-kappaB signaling | 34/1434 | 249/18723 | 7.18e-04 | 8.77e-03 | 34 |
GO:000724914 | Breast | IDC | I-kappaB kinase/NF-kappaB signaling | 37/1434 | 281/18723 | 8.58e-04 | 9.98e-03 | 37 |
GO:00431236 | Breast | IDC | positive regulation of I-kappaB kinase/NF-kappaB signaling | 26/1434 | 186/18723 | 2.06e-03 | 1.95e-02 | 26 |
GO:000931422 | Breast | DCIS | response to radiation | 62/1390 | 456/18723 | 2.56e-06 | 8.87e-05 | 62 |
GO:007147923 | Breast | DCIS | cellular response to ionizing radiation | 18/1390 | 72/18723 | 3.66e-06 | 1.16e-04 | 18 |
GO:001021223 | Breast | DCIS | response to ionizing radiation | 28/1390 | 148/18723 | 3.79e-06 | 1.16e-04 | 28 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
EEF1D | SNV | Missense_Mutation | c.1591G>A | p.Glu531Lys | p.E531K | P29692 | protein_coding | deleterious(0.03) | probably_damaging(0.954) | TCGA-BH-A0C1-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | adriamycin | PD | |
EEF1D | SNV | Missense_Mutation | novel | c.73N>T | p.Arg25Trp | p.R25W | P29692 | protein_coding | deleterious(0) | probably_damaging(0.952) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
EEF1D | SNV | Missense_Mutation | rs200146410 | c.1637G>A | p.Arg546Gln | p.R546Q | P29692 | protein_coding | tolerated(0.07) | benign(0.305) | TCGA-A6-6653-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
EEF1D | SNV | Missense_Mutation | c.1520N>A | p.Pro507Gln | p.P507Q | P29692 | protein_coding | deleterious(0.03) | benign(0.017) | TCGA-AZ-6601-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
EEF1D | SNV | Missense_Mutation | rs751524072 | c.688C>T | p.Arg230Trp | p.R230W | P29692 | protein_coding | deleterious(0.01) | possibly_damaging(0.446) | TCGA-CA-5256-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | oxaliplatin | CR |
EEF1D | SNV | Missense_Mutation | c.1282G>A | p.Ala428Thr | p.A428T | P29692 | protein_coding | deleterious(0.02) | probably_damaging(0.974) | TCGA-F4-6856-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Ancillary | leucovorin | CR | |
EEF1D | deletion | In_Frame_Del | rs532050197 | c.827_844delNNNNNNNNNNNNNNNNNN | p.Arg276_Arg281del | p.R276_R281del | P29692 | protein_coding | TCGA-A6-4105-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | ||
EEF1D | deletion | Frame_Shift_Del | c.260delA | p.Lys87ArgfsTer73 | p.K87Rfs*73 | P29692 | protein_coding | TCGA-CM-5861-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | PD | |||
EEF1D | deletion | In_Frame_Del | c.1873_1875delCTG | p.Leu625del | p.L625del | P29692 | protein_coding | TCGA-G4-6628-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |||
EEF1D | SNV | Missense_Mutation | novel | c.1159N>A | p.Ala387Thr | p.A387T | P29692 | protein_coding | deleterious(0.01) | probably_damaging(0.969) | TCGA-A5-A0G1-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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