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Gene: SPPL2A |
Gene summary for SPPL2A |
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Gene information | Species | Human | Gene symbol | SPPL2A | Gene ID | 84888 |
Gene name | signal peptide peptidase like 2A | |
Gene Alias | IMP3 | |
Cytomap | 15q21.2 | |
Gene Type | protein-coding | GO ID | GO:0001959 | UniProtAcc | Q8TCT8 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
84888 | SPPL2A | S015 | Human | Liver | HCC | 4.90e-19 | 1.14e+00 | 0.2375 |
84888 | SPPL2A | S016 | Human | Liver | HCC | 1.39e-18 | 9.37e-01 | 0.2243 |
84888 | SPPL2A | S027 | Human | Liver | HCC | 1.10e-07 | 9.32e-01 | 0.2446 |
84888 | SPPL2A | S028 | Human | Liver | HCC | 3.39e-22 | 1.10e+00 | 0.2503 |
84888 | SPPL2A | S029 | Human | Liver | HCC | 1.43e-25 | 1.25e+00 | 0.2581 |
84888 | SPPL2A | C04 | Human | Oral cavity | OSCC | 1.17e-10 | 6.30e-01 | 0.2633 |
84888 | SPPL2A | C21 | Human | Oral cavity | OSCC | 1.14e-34 | 1.15e+00 | 0.2678 |
84888 | SPPL2A | C30 | Human | Oral cavity | OSCC | 2.31e-30 | 1.40e+00 | 0.3055 |
84888 | SPPL2A | C38 | Human | Oral cavity | OSCC | 1.18e-04 | 6.91e-01 | 0.172 |
84888 | SPPL2A | C43 | Human | Oral cavity | OSCC | 1.84e-17 | 5.02e-01 | 0.1704 |
84888 | SPPL2A | C46 | Human | Oral cavity | OSCC | 2.44e-25 | 7.51e-01 | 0.1673 |
84888 | SPPL2A | C51 | Human | Oral cavity | OSCC | 1.33e-14 | 8.91e-01 | 0.2674 |
84888 | SPPL2A | C57 | Human | Oral cavity | OSCC | 8.33e-13 | 6.72e-01 | 0.1679 |
84888 | SPPL2A | C06 | Human | Oral cavity | OSCC | 4.10e-07 | 1.27e+00 | 0.2699 |
84888 | SPPL2A | C07 | Human | Oral cavity | OSCC | 5.02e-03 | 8.28e-01 | 0.2491 |
84888 | SPPL2A | C08 | Human | Oral cavity | OSCC | 1.79e-25 | 6.95e-01 | 0.1919 |
84888 | SPPL2A | LN22 | Human | Oral cavity | OSCC | 6.78e-08 | 8.53e-01 | 0.1733 |
84888 | SPPL2A | LN46 | Human | Oral cavity | OSCC | 9.71e-15 | 7.47e-01 | 0.1666 |
84888 | SPPL2A | LP15 | Human | Oral cavity | LP | 2.17e-02 | 1.02e+00 | 0.2174 |
84888 | SPPL2A | LP17 | Human | Oral cavity | LP | 2.05e-03 | 8.64e-01 | 0.2349 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0033619 | Colorectum | AD | membrane protein proteolysis | 21/3918 | 57/18723 | 4.16e-03 | 2.88e-02 | 21 |
GO:00336191 | Colorectum | MSS | membrane protein proteolysis | 20/3467 | 57/18723 | 2.23e-03 | 1.84e-02 | 20 |
GO:0006509 | Colorectum | MSS | membrane protein ectodomain proteolysis | 15/3467 | 43/18723 | 8.06e-03 | 4.91e-02 | 15 |
GO:00607595 | Esophagus | ESCC | regulation of response to cytokine stimulus | 103/8552 | 162/18723 | 3.14e-06 | 3.53e-05 | 103 |
GO:003320914 | Esophagus | ESCC | tumor necrosis factor-mediated signaling pathway | 67/8552 | 99/18723 | 7.87e-06 | 7.72e-05 | 67 |
GO:00019595 | Esophagus | ESCC | regulation of cytokine-mediated signaling pathway | 95/8552 | 150/18723 | 9.48e-06 | 9.04e-05 | 95 |
GO:003461220 | Esophagus | ESCC | response to tumor necrosis factor | 149/8552 | 253/18723 | 1.47e-05 | 1.33e-04 | 149 |
GO:007135620 | Esophagus | ESCC | cellular response to tumor necrosis factor | 132/8552 | 229/18723 | 1.69e-04 | 1.11e-03 | 132 |
GO:00065095 | Esophagus | ESCC | membrane protein ectodomain proteolysis | 31/8552 | 43/18723 | 4.04e-04 | 2.30e-03 | 31 |
GO:00336195 | Esophagus | ESCC | membrane protein proteolysis | 39/8552 | 57/18723 | 4.34e-04 | 2.44e-03 | 39 |
GO:00108033 | Esophagus | ESCC | regulation of tumor necrosis factor-mediated signaling pathway | 31/8552 | 47/18723 | 4.01e-03 | 1.62e-02 | 31 |
GO:00336192 | Liver | Cirrhotic | membrane protein proteolysis | 31/4634 | 57/18723 | 1.55e-06 | 3.02e-05 | 31 |
GO:00065092 | Liver | Cirrhotic | membrane protein ectodomain proteolysis | 24/4634 | 43/18723 | 1.30e-05 | 1.82e-04 | 24 |
GO:00346126 | Liver | Cirrhotic | response to tumor necrosis factor | 89/4634 | 253/18723 | 1.24e-04 | 1.22e-03 | 89 |
GO:00713566 | Liver | Cirrhotic | cellular response to tumor necrosis factor | 79/4634 | 229/18723 | 5.68e-04 | 4.45e-03 | 79 |
GO:003461211 | Liver | HCC | response to tumor necrosis factor | 132/7958 | 253/18723 | 1.14e-03 | 6.48e-03 | 132 |
GO:00065091 | Liver | HCC | membrane protein ectodomain proteolysis | 28/7958 | 43/18723 | 2.30e-03 | 1.14e-02 | 28 |
GO:003361911 | Liver | HCC | membrane protein proteolysis | 35/7958 | 57/18723 | 3.08e-03 | 1.43e-02 | 35 |
GO:007135611 | Liver | HCC | cellular response to tumor necrosis factor | 115/7958 | 229/18723 | 1.08e-02 | 3.99e-02 | 115 |
GO:003461218 | Oral cavity | OSCC | response to tumor necrosis factor | 143/7305 | 253/18723 | 1.09e-08 | 2.23e-07 | 143 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SPPL2A | SNV | Missense_Mutation | novel | c.1204C>A | p.Leu402Ile | p.L402I | Q8TCT8 | protein_coding | tolerated(0.39) | benign(0.119) | TCGA-A2-A25A-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Cytoxan | SD |
SPPL2A | SNV | Missense_Mutation | c.972C>G | p.Phe324Leu | p.F324L | Q8TCT8 | protein_coding | deleterious(0) | possibly_damaging(0.856) | TCGA-A8-A092-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | paclitaxel | CR | |
SPPL2A | SNV | Missense_Mutation | c.952N>A | p.Asp318Asn | p.D318N | Q8TCT8 | protein_coding | deleterious(0.05) | probably_damaging(0.968) | TCGA-BH-A208-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
SPPL2A | SNV | Missense_Mutation | rs768668639 | c.920N>A | p.Arg307Gln | p.R307Q | Q8TCT8 | protein_coding | deleterious(0) | probably_damaging(0.924) | TCGA-IR-A3LA-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
SPPL2A | SNV | Missense_Mutation | c.331N>A | p.Ala111Thr | p.A111T | Q8TCT8 | protein_coding | tolerated(0.08) | benign(0.014) | TCGA-A6-5665-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
SPPL2A | SNV | Missense_Mutation | rs774432755 | c.1331N>G | p.Tyr444Cys | p.Y444C | Q8TCT8 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AA-3710-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
SPPL2A | SNV | Missense_Mutation | c.630N>C | p.Lys210Asn | p.K210N | Q8TCT8 | protein_coding | deleterious(0.04) | benign(0.388) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD | |
SPPL2A | SNV | Missense_Mutation | c.955N>G | p.Ile319Val | p.I319V | Q8TCT8 | protein_coding | tolerated(0.36) | benign(0.009) | TCGA-AA-A01R-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5-fluorouracil | PD | |
SPPL2A | SNV | Missense_Mutation | rs768668639 | c.920N>A | p.Arg307Gln | p.R307Q | Q8TCT8 | protein_coding | deleterious(0) | probably_damaging(0.924) | TCGA-CA-6718-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | PD |
SPPL2A | SNV | Missense_Mutation | c.664A>G | p.Thr222Ala | p.T222A | Q8TCT8 | protein_coding | tolerated(0.11) | probably_damaging(0.951) | TCGA-CM-4743-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Chemotherapy | capecitabine | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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