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Gene: FAM96B |
Gene summary for FAM96B |
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Gene information | Species | Human | Gene symbol | FAM96B | Gene ID | 51647 |
Gene name | cytosolic iron-sulfur assembly component 2B | |
Gene Alias | CGI-128 | |
Cytomap | 16q22.1 | |
Gene Type | protein-coding | GO ID | GO:0006790 | UniProtAcc | Q9Y3D0 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
51647 | FAM96B | P89T-E | Human | Esophagus | ESCC | 1.26e-35 | 2.58e+00 | 0.1752 |
51647 | FAM96B | P91T-E | Human | Esophagus | ESCC | 8.06e-19 | 2.93e+00 | 0.1828 |
51647 | FAM96B | P94T-E | Human | Esophagus | ESCC | 1.47e-04 | 1.81e+00 | 0.0879 |
51647 | FAM96B | P104T-E | Human | Esophagus | ESCC | 1.00e-04 | 8.10e-01 | 0.0931 |
51647 | FAM96B | P107T-E | Human | Esophagus | ESCC | 1.21e-82 | 2.17e+00 | 0.171 |
51647 | FAM96B | P126T-E | Human | Esophagus | ESCC | 1.36e-19 | 2.33e+00 | 0.1125 |
51647 | FAM96B | P127T-E | Human | Esophagus | ESCC | 2.38e-96 | 1.71e+00 | 0.0826 |
51647 | FAM96B | P128T-E | Human | Esophagus | ESCC | 6.55e-55 | 2.00e+00 | 0.1241 |
51647 | FAM96B | P130T-E | Human | Esophagus | ESCC | 1.31e-106 | 2.60e+00 | 0.1676 |
51647 | FAM96B | S43 | Human | Liver | Cirrhotic | 1.83e-22 | -4.88e-01 | -0.0187 |
51647 | FAM96B | HCC1_Meng | Human | Liver | HCC | 4.35e-81 | 9.23e-02 | 0.0246 |
51647 | FAM96B | HCC2_Meng | Human | Liver | HCC | 7.78e-39 | 6.69e-02 | 0.0107 |
51647 | FAM96B | cirrhotic1 | Human | Liver | Cirrhotic | 1.15e-22 | 3.68e-01 | 0.0202 |
51647 | FAM96B | cirrhotic2 | Human | Liver | Cirrhotic | 5.77e-22 | 2.62e-01 | 0.0201 |
51647 | FAM96B | cirrhotic3 | Human | Liver | Cirrhotic | 4.61e-20 | 3.10e-01 | 0.0215 |
51647 | FAM96B | HCC1 | Human | Liver | HCC | 1.10e-07 | 3.93e+00 | 0.5336 |
51647 | FAM96B | HCC2 | Human | Liver | HCC | 3.18e-20 | 3.86e+00 | 0.5341 |
51647 | FAM96B | HCC5 | Human | Liver | HCC | 2.45e-05 | 1.33e+00 | 0.4932 |
51647 | FAM96B | Pt13.a | Human | Liver | HCC | 2.92e-02 | 2.23e-01 | 0.021 |
51647 | FAM96B | Pt13.b | Human | Liver | HCC | 6.40e-35 | 3.77e-01 | 0.0251 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
FAM96B | SNV | Missense_Mutation | c.484C>T | p.Arg162Cys | p.R162C | Q9Y3D0 | protein_coding | tolerated_low_confidence(0.1) | benign(0.01) | TCGA-D8-A13Z-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicine | SD | |
FAM96B | insertion | Frame_Shift_Ins | novel | c.167_168insATTAGCAGAGAGGAAACTG | p.Glu57LeufsTer26 | p.E57Lfs*26 | Q9Y3D0 | protein_coding | TCGA-AN-A0FX-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | ||
FAM96B | SNV | Missense_Mutation | c.484N>T | p.Arg162Cys | p.R162C | Q9Y3D0 | protein_coding | tolerated_low_confidence(0.1) | benign(0.01) | TCGA-EK-A2RN-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD | |
FAM96B | SNV | Missense_Mutation | novel | c.171N>T | p.Glu57Asp | p.E57D | Q9Y3D0 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR |
FAM96B | SNV | Missense_Mutation | novel | c.70N>T | p.Gly24Trp | p.G24W | Q9Y3D0 | protein_coding | deleterious(0.01) | possibly_damaging(0.765) | TCGA-44-7661-01 | Lung | lung adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
FAM96B | SNV | Missense_Mutation | novel | c.157N>T | p.Ile53Phe | p.I53F | Q9Y3D0 | protein_coding | deleterious(0) | probably_damaging(0.987) | TCGA-MP-A4T9-01 | Lung | lung adenocarcinoma | Female | <65 | III/IV | Chemotherapy | vinorelbine | PD |
FAM96B | SNV | Missense_Mutation | c.144N>A | p.Asp48Glu | p.D48E | Q9Y3D0 | protein_coding | tolerated(0.22) | possibly_damaging(0.498) | TCGA-J4-A67Q-01 | Prostate | prostate adenocarcinoma | Male | >=65 | 6 | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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