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Gene: ATP5J |
Gene summary for ATP5J |
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Gene information | Species | Human | Gene symbol | ATP5J | Gene ID | 522 |
Gene name | ATP synthase peripheral stalk subunit F6 | |
Gene Alias | ATP5 | |
Cytomap | 21q21.3 | |
Gene Type | protein-coding | GO ID | GO:0002027 | UniProtAcc | P18859 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
522 | ATP5J | P16T-E | Human | Esophagus | ESCC | 9.81e-44 | 1.24e+00 | 0.1153 |
522 | ATP5J | P17T-E | Human | Esophagus | ESCC | 5.29e-20 | 1.48e+00 | 0.1278 |
522 | ATP5J | P19T-E | Human | Esophagus | ESCC | 1.89e-14 | 1.82e+00 | 0.1662 |
522 | ATP5J | P20T-E | Human | Esophagus | ESCC | 1.34e-35 | 1.06e+00 | 0.1124 |
522 | ATP5J | P21T-E | Human | Esophagus | ESCC | 1.74e-73 | 1.92e+00 | 0.1617 |
522 | ATP5J | P22T-E | Human | Esophagus | ESCC | 2.28e-69 | 1.66e+00 | 0.1236 |
522 | ATP5J | P23T-E | Human | Esophagus | ESCC | 1.34e-60 | 1.79e+00 | 0.108 |
522 | ATP5J | P24T-E | Human | Esophagus | ESCC | 3.24e-42 | 1.17e+00 | 0.1287 |
522 | ATP5J | P26T-E | Human | Esophagus | ESCC | 2.61e-47 | 1.37e+00 | 0.1276 |
522 | ATP5J | P27T-E | Human | Esophagus | ESCC | 3.40e-64 | 1.61e+00 | 0.1055 |
522 | ATP5J | P28T-E | Human | Esophagus | ESCC | 7.08e-77 | 2.09e+00 | 0.1149 |
522 | ATP5J | P30T-E | Human | Esophagus | ESCC | 5.79e-42 | 2.24e+00 | 0.137 |
522 | ATP5J | P31T-E | Human | Esophagus | ESCC | 1.95e-48 | 1.27e+00 | 0.1251 |
522 | ATP5J | P32T-E | Human | Esophagus | ESCC | 1.76e-49 | 1.30e+00 | 0.1666 |
522 | ATP5J | P36T-E | Human | Esophagus | ESCC | 3.71e-18 | 1.19e+00 | 0.1187 |
522 | ATP5J | P37T-E | Human | Esophagus | ESCC | 1.37e-46 | 1.56e+00 | 0.1371 |
522 | ATP5J | P38T-E | Human | Esophagus | ESCC | 7.68e-19 | 1.34e+00 | 0.127 |
522 | ATP5J | P39T-E | Human | Esophagus | ESCC | 1.02e-23 | 6.52e-01 | 0.0894 |
522 | ATP5J | P40T-E | Human | Esophagus | ESCC | 2.33e-25 | 1.06e+00 | 0.109 |
522 | ATP5J | P42T-E | Human | Esophagus | ESCC | 1.37e-30 | 1.13e+00 | 0.1175 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa0501218 | Breast | Precancer | Parkinson disease | 99/684 | 266/8465 | 3.58e-42 | 5.65e-40 | 4.33e-40 | 99 |
hsa0502016 | Breast | Precancer | Prion disease | 95/684 | 273/8465 | 1.39e-37 | 1.46e-35 | 1.12e-35 | 95 |
hsa0501616 | Breast | Precancer | Huntington disease | 98/684 | 306/8465 | 2.85e-35 | 2.25e-33 | 1.72e-33 | 98 |
hsa0019016 | Breast | Precancer | Oxidative phosphorylation | 59/684 | 134/8465 | 6.15e-30 | 3.24e-28 | 2.48e-28 | 59 |
hsa0501016 | Breast | Precancer | Alzheimer disease | 103/684 | 384/8465 | 1.03e-29 | 4.66e-28 | 3.57e-28 | 103 |
hsa0501416 | Breast | Precancer | Amyotrophic lateral sclerosis | 98/684 | 364/8465 | 2.13e-28 | 8.41e-27 | 6.44e-27 | 98 |
hsa0502216 | Breast | Precancer | Pathways of neurodegeneration - multiple diseases | 112/684 | 476/8465 | 6.96e-27 | 2.44e-25 | 1.87e-25 | 112 |
hsa0520818 | Breast | Precancer | Chemical carcinogenesis - reactive oxygen species | 68/684 | 223/8465 | 3.61e-23 | 1.14e-21 | 8.73e-22 | 68 |
hsa0471418 | Breast | Precancer | Thermogenesis | 68/684 | 232/8465 | 4.40e-22 | 1.26e-20 | 9.69e-21 | 68 |
hsa0541518 | Breast | Precancer | Diabetic cardiomyopathy | 63/684 | 203/8465 | 5.63e-22 | 1.48e-20 | 1.14e-20 | 63 |
hsa0501219 | Breast | Precancer | Parkinson disease | 99/684 | 266/8465 | 3.58e-42 | 5.65e-40 | 4.33e-40 | 99 |
hsa0502017 | Breast | Precancer | Prion disease | 95/684 | 273/8465 | 1.39e-37 | 1.46e-35 | 1.12e-35 | 95 |
hsa0501617 | Breast | Precancer | Huntington disease | 98/684 | 306/8465 | 2.85e-35 | 2.25e-33 | 1.72e-33 | 98 |
hsa0019017 | Breast | Precancer | Oxidative phosphorylation | 59/684 | 134/8465 | 6.15e-30 | 3.24e-28 | 2.48e-28 | 59 |
hsa0501017 | Breast | Precancer | Alzheimer disease | 103/684 | 384/8465 | 1.03e-29 | 4.66e-28 | 3.57e-28 | 103 |
hsa0501417 | Breast | Precancer | Amyotrophic lateral sclerosis | 98/684 | 364/8465 | 2.13e-28 | 8.41e-27 | 6.44e-27 | 98 |
hsa0502217 | Breast | Precancer | Pathways of neurodegeneration - multiple diseases | 112/684 | 476/8465 | 6.96e-27 | 2.44e-25 | 1.87e-25 | 112 |
hsa0520819 | Breast | Precancer | Chemical carcinogenesis - reactive oxygen species | 68/684 | 223/8465 | 3.61e-23 | 1.14e-21 | 8.73e-22 | 68 |
hsa0471419 | Breast | Precancer | Thermogenesis | 68/684 | 232/8465 | 4.40e-22 | 1.26e-20 | 9.69e-21 | 68 |
hsa0541519 | Breast | Precancer | Diabetic cardiomyopathy | 63/684 | 203/8465 | 5.63e-22 | 1.48e-20 | 1.14e-20 | 63 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
ATP5J | SNV | Missense_Mutation | novel | c.10N>A | p.Asp4Asn | p.D4N | P18859 | protein_coding | tolerated_low_confidence(0.18) | benign(0.005) | TCGA-E2-A10C-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | cytoxan | SD |
ATP5J | SNV | Missense_Mutation | novel | c.10N>A | p.Asp4Asn | p.D4N | P18859 | protein_coding | tolerated_low_confidence(0.18) | benign(0.005) | TCGA-LL-A73Y-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | taxotere | SD |
ATP5J | SNV | Missense_Mutation | novel | c.290N>T | p.Thr97Ile | p.T97I | P18859 | protein_coding | deleterious(0.05) | possibly_damaging(0.481) | TCGA-A5-A0G2-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unknown | Unknown | SD |
ATP5J | SNV | Missense_Mutation | rs140201687 | c.88N>T | p.Arg30Trp | p.R30W | P18859 | protein_coding | tolerated(0.08) | benign(0.019) | TCGA-AX-A06D-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | III/IV | Chemotherapy | carboplatin | PD |
ATP5J | SNV | Missense_Mutation | c.115G>A | p.Ala39Thr | p.A39T | P18859 | protein_coding | tolerated(0.1) | probably_damaging(0.991) | TCGA-AX-A1CE-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unspecific | Paclitaxel | SD | |
ATP5J | SNV | Missense_Mutation | c.56N>A | p.Ser19Tyr | p.S19Y | P18859 | protein_coding | deleterious(0) | possibly_damaging(0.747) | TCGA-B5-A11E-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
ATP5J | SNV | Missense_Mutation | c.115G>A | p.Ala39Thr | p.A39T | P18859 | protein_coding | tolerated(0.1) | probably_damaging(0.991) | TCGA-BK-A0C9-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
ATP5J | SNV | Missense_Mutation | c.185N>A | p.Arg62Gln | p.R62Q | P18859 | protein_coding | tolerated(0.32) | benign(0.083) | TCGA-BK-A6W3-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
ATP5J | SNV | Missense_Mutation | novel | c.106A>C | p.Thr36Pro | p.T36P | P18859 | protein_coding | deleterious(0.01) | probably_damaging(0.915) | TCGA-EO-A22X-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | III/IV | Unspecific | Carboplatin | Complete Response |
ATP5J | SNV | Missense_Mutation | novel | c.271N>T | p.Gly91Cys | p.G91C | P18859 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-85-A4QQ-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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