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Gene: SNHG6 |
Gene summary for SNHG6 |
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Gene information | Species | Human | Gene symbol | SNHG6 | Gene ID | 641638 |
Gene name | small nucleolar RNA host gene 6 | |
Gene Alias | HBII-276HG | |
Cytomap | 8q13.1 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
641638 | SNHG6 | P28T-E | Human | Esophagus | ESCC | 8.84e-36 | -9.48e-01 | 0.1149 |
641638 | SNHG6 | P30T-E | Human | Esophagus | ESCC | 2.50e-11 | -9.48e-01 | 0.137 |
641638 | SNHG6 | P31T-E | Human | Esophagus | ESCC | 1.92e-37 | -9.48e-01 | 0.1251 |
641638 | SNHG6 | P32T-E | Human | Esophagus | ESCC | 1.31e-36 | -9.48e-01 | 0.1666 |
641638 | SNHG6 | P36T-E | Human | Esophagus | ESCC | 7.84e-16 | -9.48e-01 | 0.1187 |
641638 | SNHG6 | P37T-E | Human | Esophagus | ESCC | 6.99e-29 | -9.48e-01 | 0.1371 |
641638 | SNHG6 | P38T-E | Human | Esophagus | ESCC | 2.92e-10 | -9.48e-01 | 0.127 |
641638 | SNHG6 | P39T-E | Human | Esophagus | ESCC | 1.31e-36 | -9.48e-01 | 0.0894 |
641638 | SNHG6 | P40T-E | Human | Esophagus | ESCC | 1.79e-15 | -9.48e-01 | 0.109 |
641638 | SNHG6 | P42T-E | Human | Esophagus | ESCC | 1.36e-18 | -9.48e-01 | 0.1175 |
641638 | SNHG6 | P44T-E | Human | Esophagus | ESCC | 3.81e-18 | -9.48e-01 | 0.1096 |
641638 | SNHG6 | P47T-E | Human | Esophagus | ESCC | 3.41e-36 | -9.48e-01 | 0.1067 |
641638 | SNHG6 | P48T-E | Human | Esophagus | ESCC | 3.41e-36 | -9.48e-01 | 0.0959 |
641638 | SNHG6 | P49T-E | Human | Esophagus | ESCC | 3.27e-03 | -9.48e-01 | 0.1768 |
641638 | SNHG6 | P52T-E | Human | Esophagus | ESCC | 5.03e-37 | -9.48e-01 | 0.1555 |
641638 | SNHG6 | P54T-E | Human | Esophagus | ESCC | 1.23e-22 | -9.48e-01 | 0.0975 |
641638 | SNHG6 | P57T-E | Human | Esophagus | ESCC | 2.78e-38 | -9.48e-01 | 0.0926 |
641638 | SNHG6 | P61T-E | Human | Esophagus | ESCC | 3.02e-26 | -9.48e-01 | 0.099 |
641638 | SNHG6 | P62T-E | Human | Esophagus | ESCC | 1.06e-31 | -9.48e-01 | 0.1302 |
641638 | SNHG6 | P65T-E | Human | Esophagus | ESCC | 1.70e-29 | -9.48e-01 | 0.0978 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
Page: 1 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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