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Gene: RIOK1 |
Gene summary for RIOK1 |
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Gene information | Species | Human | Gene symbol | RIOK1 | Gene ID | 83732 |
Gene name | RIO kinase 1 | |
Gene Alias | AD034 | |
Cytomap | 6p24.3 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q9BRS2 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
83732 | RIOK1 | LN38 | Human | Oral cavity | OSCC | 5.55e-03 | 6.23e-01 | 0.168 |
83732 | RIOK1 | LN46 | Human | Oral cavity | OSCC | 2.26e-06 | 4.75e-01 | 0.1666 |
83732 | RIOK1 | SYSMH1 | Human | Oral cavity | OSCC | 6.64e-11 | 3.79e-01 | 0.1127 |
83732 | RIOK1 | SYSMH2 | Human | Oral cavity | OSCC | 5.77e-24 | 7.66e-01 | 0.2326 |
83732 | RIOK1 | SYSMH3 | Human | Oral cavity | OSCC | 5.95e-29 | 7.13e-01 | 0.2442 |
83732 | RIOK1 | SYSMH4 | Human | Oral cavity | OSCC | 2.19e-03 | 5.88e-02 | 0.1226 |
83732 | RIOK1 | SYSMH5 | Human | Oral cavity | OSCC | 3.59e-05 | 1.84e-01 | 0.0647 |
83732 | RIOK1 | P1_S1_AK | Human | Skin | AK | 9.32e-04 | 2.36e-01 | -0.3399 |
83732 | RIOK1 | P4_S8_cSCC | Human | Skin | cSCC | 2.82e-04 | 1.52e-01 | -0.3095 |
83732 | RIOK1 | P1_cSCC | Human | Skin | cSCC | 9.32e-29 | 9.56e-01 | 0.0292 |
83732 | RIOK1 | P2_cSCC | Human | Skin | cSCC | 1.16e-07 | 3.77e-01 | -0.024 |
83732 | RIOK1 | P4_cSCC | Human | Skin | cSCC | 3.45e-18 | 5.49e-01 | -0.00290000000000005 |
83732 | RIOK1 | P10_cSCC | Human | Skin | cSCC | 3.28e-17 | 7.15e-01 | 0.1017 |
83732 | RIOK1 | male-WTA | Human | Thyroid | PTC | 6.35e-10 | 5.96e-02 | 0.1037 |
83732 | RIOK1 | PTC01 | Human | Thyroid | PTC | 1.29e-05 | 3.20e-02 | 0.1899 |
83732 | RIOK1 | PTC04 | Human | Thyroid | PTC | 3.22e-02 | 3.67e-02 | 0.1927 |
83732 | RIOK1 | PTC05 | Human | Thyroid | PTC | 4.91e-02 | 1.67e-01 | 0.2065 |
83732 | RIOK1 | PTC06 | Human | Thyroid | PTC | 2.90e-04 | 1.82e-01 | 0.2057 |
83732 | RIOK1 | PTC07 | Human | Thyroid | PTC | 1.13e-07 | 1.55e-01 | 0.2044 |
83732 | RIOK1 | ATC12 | Human | Thyroid | ATC | 1.51e-06 | 8.87e-02 | 0.34 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0022613111 | Esophagus | ESCC | ribonucleoprotein complex biogenesis | 365/8552 | 463/18723 | 1.74e-49 | 1.11e-45 | 365 |
GO:0042254111 | Esophagus | ESCC | ribosome biogenesis | 252/8552 | 299/18723 | 3.27e-44 | 1.04e-40 | 252 |
GO:003447015 | Esophagus | ESCC | ncRNA processing | 300/8552 | 395/18723 | 3.09e-35 | 3.26e-32 | 300 |
GO:0016072110 | Esophagus | ESCC | rRNA metabolic process | 197/8552 | 236/18723 | 1.31e-33 | 1.18e-30 | 197 |
GO:0006364110 | Esophagus | ESCC | rRNA processing | 189/8552 | 225/18723 | 4.88e-33 | 3.87e-30 | 189 |
GO:003466012 | Esophagus | ESCC | ncRNA metabolic process | 346/8552 | 485/18723 | 4.35e-31 | 2.51e-28 | 346 |
GO:0042274111 | Esophagus | ESCC | ribosomal small subunit biogenesis | 67/8552 | 73/18723 | 6.62e-17 | 5.38e-15 | 67 |
GO:00304904 | Esophagus | ESCC | maturation of SSU-rRNA | 45/8552 | 50/18723 | 5.07e-11 | 1.63e-09 | 45 |
GO:2000234 | Esophagus | ESCC | positive regulation of rRNA processing | 9/8552 | 10/18723 | 5.09e-03 | 1.92e-02 | 9 |
GO:002261322 | Liver | HCC | ribonucleoprotein complex biogenesis | 355/7958 | 463/18723 | 7.76e-52 | 4.92e-48 | 355 |
GO:004225422 | Liver | HCC | ribosome biogenesis | 246/7958 | 299/18723 | 4.99e-46 | 1.58e-42 | 246 |
GO:00344702 | Liver | HCC | ncRNA processing | 293/7958 | 395/18723 | 4.26e-38 | 6.76e-35 | 293 |
GO:001607212 | Liver | HCC | rRNA metabolic process | 193/7958 | 236/18723 | 1.26e-35 | 1.14e-32 | 193 |
GO:000636421 | Liver | HCC | rRNA processing | 185/7958 | 225/18723 | 8.14e-35 | 6.45e-32 | 185 |
GO:00346601 | Liver | HCC | ncRNA metabolic process | 332/7958 | 485/18723 | 1.48e-31 | 7.80e-29 | 332 |
GO:004227422 | Liver | HCC | ribosomal small subunit biogenesis | 65/7958 | 73/18723 | 1.09e-16 | 9.92e-15 | 65 |
GO:00304901 | Liver | HCC | maturation of SSU-rRNA | 43/7958 | 50/18723 | 2.35e-10 | 8.04e-09 | 43 |
GO:002261320 | Oral cavity | OSCC | ribonucleoprotein complex biogenesis | 333/7305 | 463/18723 | 8.28e-48 | 5.24e-44 | 333 |
GO:004225420 | Oral cavity | OSCC | ribosome biogenesis | 230/7305 | 299/18723 | 3.22e-41 | 6.80e-38 | 230 |
GO:000636410 | Oral cavity | OSCC | rRNA processing | 172/7305 | 225/18723 | 1.57e-30 | 1.24e-27 | 172 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
RIOK1 | SNV | Missense_Mutation | c.1491N>A | p.Asp497Glu | p.D497E | Q9BRS2 | protein_coding | tolerated(0.6) | benign(0.003) | TCGA-D8-A1XK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicine+cyclophosphamide | SD | |
RIOK1 | SNV | Missense_Mutation | c.941N>C | p.Met314Thr | p.M314T | Q9BRS2 | protein_coding | deleterious(0) | probably_damaging(0.988) | TCGA-D8-A1XQ-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
RIOK1 | insertion | Nonsense_Mutation | novel | c.354_355insGTTCATTTACCCCCAAAGTATATAATAAAGAGCTAAGACC | p.Lys119ValfsTer12 | p.K119Vfs*12 | Q9BRS2 | protein_coding | TCGA-A8-A06X-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
RIOK1 | SNV | Missense_Mutation | novel | c.1121C>T | p.Ala374Val | p.A374V | Q9BRS2 | protein_coding | deleterious(0.02) | possibly_damaging(0.658) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
RIOK1 | SNV | Missense_Mutation | novel | c.1366G>A | p.Ala456Thr | p.A456T | Q9BRS2 | protein_coding | deleterious(0.05) | benign(0.154) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
RIOK1 | SNV | Missense_Mutation | rs547473770 | c.658N>T | p.Arg220Trp | p.R220W | Q9BRS2 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-C5-A7UE-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | SD |
RIOK1 | SNV | Missense_Mutation | c.1423G>C | p.Asp475His | p.D475H | Q9BRS2 | protein_coding | deleterious(0) | possibly_damaging(0.536) | TCGA-DR-A0ZM-01 | Cervix | cervical & endocervical cancer | Female | <65 | III/IV | Unspecific | Cisplatin | SD | |
RIOK1 | SNV | Missense_Mutation | c.1465C>G | p.Gln489Glu | p.Q489E | Q9BRS2 | protein_coding | tolerated(0.81) | benign(0) | TCGA-EK-A2H0-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR | |
RIOK1 | SNV | Missense_Mutation | c.1465N>G | p.Gln489Glu | p.Q489E | Q9BRS2 | protein_coding | tolerated(0.81) | benign(0) | TCGA-ZJ-A8QQ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | SD | |
RIOK1 | SNV | Missense_Mutation | c.295N>A | p.Asp99Asn | p.D99N | Q9BRS2 | protein_coding | tolerated(0.69) | benign(0) | TCGA-AA-3815-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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