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Gene: RAB5IF |
Gene summary for RAB5IF |
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Gene information | Species | Human | Gene symbol | RAB5IF | Gene ID | 55969 |
Gene name | RAB5 interacting factor | |
Gene Alias | C20orf24 | |
Cytomap | 20q11.23 | |
Gene Type | protein-coding | GO ID | GO:0006996 | UniProtAcc | Q9BUV8 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
55969 | RAB5IF | GSM5353244_PA_PR5261_T2_S24_L002 | Human | Prostate | Tumor | 4.75e-08 | -3.76e-01 | 0.1569 |
55969 | RAB5IF | P1_S1_AK | Human | Skin | AK | 3.06e-08 | 2.89e-01 | -0.3399 |
55969 | RAB5IF | P2_S3_AK | Human | Skin | AK | 8.50e-07 | 2.92e-01 | -0.3287 |
55969 | RAB5IF | P2_S4_SCCIS | Human | Skin | SCCIS | 1.73e-04 | 3.40e-01 | -0.3043 |
55969 | RAB5IF | P3_S6_AK | Human | Skin | AK | 3.33e-02 | 2.33e-01 | -0.3256 |
55969 | RAB5IF | P4_S8_cSCC | Human | Skin | cSCC | 8.13e-18 | 4.23e-01 | -0.3095 |
55969 | RAB5IF | P5_S10_cSCC | Human | Skin | cSCC | 2.27e-51 | 7.10e-01 | -0.299 |
55969 | RAB5IF | P2_cSCC | Human | Skin | cSCC | 1.35e-04 | -1.76e-01 | -0.024 |
55969 | RAB5IF | P4_cSCC | Human | Skin | cSCC | 8.47e-03 | -1.76e-01 | -0.00290000000000005 |
55969 | RAB5IF | P10_cSCC | Human | Skin | cSCC | 2.57e-03 | -1.76e-01 | 0.1017 |
55969 | RAB5IF | cSCC_p1 | Human | Skin | cSCC | 1.79e-02 | -1.76e-01 | -0.1916 |
55969 | RAB5IF | cSCC_p10 | Human | Skin | cSCC | 1.79e-02 | -1.76e-01 | -0.2095 |
55969 | RAB5IF | cSCC_p11 | Human | Skin | cSCC | 4.01e-03 | -1.76e-01 | -0.2102 |
55969 | RAB5IF | cSCC_p3 | Human | Skin | cSCC | 1.79e-02 | -1.76e-01 | -0.2085 |
55969 | RAB5IF | cSCC_p4 | Human | Skin | cSCC | 8.47e-03 | -1.76e-01 | -0.2022 |
55969 | RAB5IF | cSCC_p6 | Human | Skin | cSCC | 8.97e-04 | -1.76e-01 | -0.1989 |
55969 | RAB5IF | cSCC_p7 | Human | Skin | cSCC | 8.47e-03 | -1.76e-01 | -0.2332 |
55969 | RAB5IF | cSCC_p8 | Human | Skin | cSCC | 4.01e-03 | -1.76e-01 | -0.1971 |
55969 | RAB5IF | cSCC_p9 | Human | Skin | cSCC | 4.01e-03 | -1.76e-01 | -0.1991 |
55969 | RAB5IF | Pat01-B | Human | Stomach | GC | 3.58e-45 | 7.46e-01 | 0.5754 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0097250 | Stomach | GC | mitochondrial respirasome assembly | 4/1159 | 10/18723 | 2.27e-03 | 2.20e-02 | 4 |
GO:00972501 | Stomach | CAG with IM | mitochondrial respirasome assembly | 4/1050 | 10/18723 | 1.57e-03 | 1.75e-02 | 4 |
GO:00972502 | Stomach | CSG | mitochondrial respirasome assembly | 4/1034 | 10/18723 | 1.48e-03 | 1.68e-02 | 4 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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