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Gene: IRF2 |
Gene summary for IRF2 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | IRF2 | Gene ID | 3660 |
| Gene name | interferon regulatory factor 2 | |
| Gene Alias | IRF-2 | |
| Cytomap | 4q35.1 | |
| Gene Type | protein-coding | GO ID | GO:0000122 | UniProtAcc | P14316 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 3660 | IRF2 | P107T-E | Human | Esophagus | ESCC | 1.30e-24 | 5.17e-01 | 0.171 |
| 3660 | IRF2 | P126T-E | Human | Esophagus | ESCC | 5.46e-04 | 6.57e-01 | 0.1125 |
| 3660 | IRF2 | P127T-E | Human | Esophagus | ESCC | 1.21e-25 | 5.54e-01 | 0.0826 |
| 3660 | IRF2 | P128T-E | Human | Esophagus | ESCC | 3.32e-13 | 4.06e-01 | 0.1241 |
| 3660 | IRF2 | P130T-E | Human | Esophagus | ESCC | 5.77e-34 | 7.26e-01 | 0.1676 |
| 3660 | IRF2 | S43 | Human | Liver | Cirrhotic | 2.04e-02 | -1.08e-01 | -0.0187 |
| 3660 | IRF2 | HCC1_Meng | Human | Liver | HCC | 1.41e-38 | -4.51e-02 | 0.0246 |
| 3660 | IRF2 | HCC2_Meng | Human | Liver | HCC | 9.58e-23 | 8.52e-02 | 0.0107 |
| 3660 | IRF2 | HCC2 | Human | Liver | HCC | 9.37e-03 | 3.14e+00 | 0.5341 |
| 3660 | IRF2 | Pt13.b | Human | Liver | HCC | 4.21e-02 | 8.88e-03 | 0.0251 |
| 3660 | IRF2 | S014 | Human | Liver | HCC | 3.46e-04 | 3.89e-01 | 0.2254 |
| 3660 | IRF2 | S027 | Human | Liver | HCC | 4.48e-02 | 5.89e-01 | 0.2446 |
| 3660 | IRF2 | S028 | Human | Liver | HCC | 1.66e-08 | 5.79e-01 | 0.2503 |
| 3660 | IRF2 | S029 | Human | Liver | HCC | 1.97e-10 | 7.50e-01 | 0.2581 |
| 3660 | IRF2 | C04 | Human | Oral cavity | OSCC | 5.96e-07 | 4.47e-01 | 0.2633 |
| 3660 | IRF2 | C21 | Human | Oral cavity | OSCC | 5.02e-26 | 7.58e-01 | 0.2678 |
| 3660 | IRF2 | C30 | Human | Oral cavity | OSCC | 1.05e-13 | 8.32e-01 | 0.3055 |
| 3660 | IRF2 | C38 | Human | Oral cavity | OSCC | 1.50e-07 | 8.07e-01 | 0.172 |
| 3660 | IRF2 | C43 | Human | Oral cavity | OSCC | 6.15e-24 | 4.79e-01 | 0.1704 |
| 3660 | IRF2 | C46 | Human | Oral cavity | OSCC | 2.91e-19 | 5.24e-01 | 0.1673 |
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| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:1903131 | Colorectum | FAP | mononuclear cell differentiation | 79/2622 | 426/18723 | 5.00e-03 | 3.33e-02 | 79 |
| GO:000961518 | Esophagus | ESCC | response to virus | 238/8552 | 367/18723 | 6.65e-14 | 3.32e-12 | 238 |
| GO:00516075 | Esophagus | ESCC | defense response to virus | 171/8552 | 265/18723 | 3.91e-10 | 1.05e-08 | 171 |
| GO:01405465 | Esophagus | ESCC | defense response to symbiont | 171/8552 | 265/18723 | 3.91e-10 | 1.05e-08 | 171 |
| GO:19031317 | Esophagus | ESCC | mononuclear cell differentiation | 226/8552 | 426/18723 | 1.20e-03 | 5.88e-03 | 226 |
| GO:00300984 | Esophagus | ESCC | lymphocyte differentiation | 192/8552 | 374/18723 | 1.52e-02 | 4.93e-02 | 192 |
| GO:00096155 | Liver | Cirrhotic | response to virus | 126/4634 | 367/18723 | 2.10e-05 | 2.77e-04 | 126 |
| GO:0051607 | Liver | Cirrhotic | defense response to virus | 84/4634 | 265/18723 | 6.02e-03 | 3.00e-02 | 84 |
| GO:0140546 | Liver | Cirrhotic | defense response to symbiont | 84/4634 | 265/18723 | 6.02e-03 | 3.00e-02 | 84 |
| GO:000020921 | Liver | HCC | protein polyubiquitination | 151/7958 | 236/18723 | 1.90e-11 | 7.59e-10 | 151 |
| GO:000961511 | Liver | HCC | response to virus | 210/7958 | 367/18723 | 7.32e-09 | 1.86e-07 | 210 |
| GO:00516071 | Liver | HCC | defense response to virus | 151/7958 | 265/18723 | 1.27e-06 | 1.85e-05 | 151 |
| GO:01405461 | Liver | HCC | defense response to symbiont | 151/7958 | 265/18723 | 1.27e-06 | 1.85e-05 | 151 |
| GO:000961515 | Oral cavity | OSCC | response to virus | 215/7305 | 367/18723 | 1.63e-14 | 9.41e-13 | 215 |
| GO:00516074 | Oral cavity | OSCC | defense response to virus | 154/7305 | 265/18723 | 1.96e-10 | 5.63e-09 | 154 |
| GO:01405464 | Oral cavity | OSCC | defense response to symbiont | 154/7305 | 265/18723 | 1.96e-10 | 5.63e-09 | 154 |
| GO:19031316 | Oral cavity | OSCC | mononuclear cell differentiation | 210/7305 | 426/18723 | 8.44e-06 | 9.02e-05 | 210 |
| GO:00300983 | Oral cavity | OSCC | lymphocyte differentiation | 179/7305 | 374/18723 | 2.74e-04 | 1.74e-03 | 179 |
| GO:190313114 | Oral cavity | EOLP | mononuclear cell differentiation | 88/2218 | 426/18723 | 1.07e-07 | 3.61e-06 | 88 |
| GO:003009812 | Oral cavity | EOLP | lymphocyte differentiation | 76/2218 | 374/18723 | 1.50e-06 | 3.55e-05 | 76 |
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| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| IRF2 | SNV | Missense_Mutation | c.989C>T | p.Thr330Ile | p.T330I | P14316 | protein_coding | deleterious(0.05) | benign(0.057) | TCGA-BH-A18G-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
| IRF2 | SNV | Missense_Mutation | novel | c.1016C>T | p.Ser339Leu | p.S339L | P14316 | protein_coding | deleterious(0) | probably_damaging(0.945) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
| IRF2 | SNV | Missense_Mutation | c.128G>C | p.Arg43Thr | p.R43T | P14316 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-DR-A0ZM-01 | Cervix | cervical & endocervical cancer | Female | <65 | III/IV | Unspecific | Cisplatin | SD | |
| IRF2 | SNV | Missense_Mutation | rs761561042 | c.893C>T | p.Pro298Leu | p.P298L | P14316 | protein_coding | tolerated(0.05) | probably_damaging(0.999) | TCGA-MA-AA42-01 | Cervix | cervical & endocervical cancer | Female | >=65 | I/II | Unknown | Unknown | SD |
| IRF2 | insertion | Nonsense_Mutation | novel | c.997_998insAATAG | p.Ser333LysfsTer2 | p.S333Kfs*2 | P14316 | protein_coding | TCGA-DS-A1OD-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | SD | ||
| IRF2 | SNV | Missense_Mutation | c.323N>G | p.Val108Gly | p.V108G | P14316 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AA-3979-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
| IRF2 | SNV | Missense_Mutation | c.300N>T | p.Lys100Asn | p.K100N | P14316 | protein_coding | tolerated(0.26) | probably_damaging(0.999) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR | |
| IRF2 | SNV | Missense_Mutation | c.122N>T | p.Ala41Val | p.A41V | P14316 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR | |
| IRF2 | SNV | Missense_Mutation | c.25N>T | p.Arg9Cys | p.R9C | P14316 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
| IRF2 | SNV | Missense_Mutation | rs753833490 | c.991N>T | p.Arg331Trp | p.R331W | P14316 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-CM-6162-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Chemotherapy | oxaliplatin | SD |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| 3660 | IRF2 | CLINICALLY ACTIONABLE, TRANSCRIPTION FACTOR | IFN | 16241857,16533423 | ||
| 3660 | IRF2 | CLINICALLY ACTIONABLE, TRANSCRIPTION FACTOR | INTERFERON GAMMA | 10859338 |
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