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Gene: INO80E |
Gene summary for INO80E |
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Gene information | Species | Human | Gene symbol | INO80E | Gene ID | 283899 |
Gene name | INO80 complex subunit E | |
Gene Alias | CCDC95 | |
Cytomap | 16p11.2 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | J3KNE2 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
283899 | INO80E | P91T-E | Human | Esophagus | ESCC | 1.02e-28 | 2.20e+00 | 0.1828 |
283899 | INO80E | P94T-E | Human | Esophagus | ESCC | 1.84e-02 | 5.56e-01 | 0.0879 |
283899 | INO80E | P104T-E | Human | Esophagus | ESCC | 6.03e-09 | 5.92e-01 | 0.0931 |
283899 | INO80E | P107T-E | Human | Esophagus | ESCC | 3.83e-50 | 9.64e-01 | 0.171 |
283899 | INO80E | P126T-E | Human | Esophagus | ESCC | 6.46e-11 | 6.34e-01 | 0.1125 |
283899 | INO80E | P127T-E | Human | Esophagus | ESCC | 2.07e-28 | 4.64e-01 | 0.0826 |
283899 | INO80E | P128T-E | Human | Esophagus | ESCC | 5.54e-46 | 1.06e+00 | 0.1241 |
283899 | INO80E | P130T-E | Human | Esophagus | ESCC | 5.97e-63 | 1.27e+00 | 0.1676 |
283899 | INO80E | HCC1_Meng | Human | Liver | HCC | 3.32e-24 | -5.53e-02 | 0.0246 |
283899 | INO80E | HCC2_Meng | Human | Liver | HCC | 2.07e-12 | 5.64e-02 | 0.0107 |
283899 | INO80E | cirrhotic1 | Human | Liver | Cirrhotic | 2.28e-09 | 2.39e-01 | 0.0202 |
283899 | INO80E | cirrhotic3 | Human | Liver | Cirrhotic | 2.20e-13 | 2.22e-01 | 0.0215 |
283899 | INO80E | HCC1 | Human | Liver | HCC | 8.37e-08 | 2.70e+00 | 0.5336 |
283899 | INO80E | Pt13.b | Human | Liver | HCC | 5.19e-05 | 2.00e-02 | 0.0251 |
283899 | INO80E | S014 | Human | Liver | HCC | 1.67e-17 | 7.64e-01 | 0.2254 |
283899 | INO80E | S015 | Human | Liver | HCC | 1.17e-18 | 8.86e-01 | 0.2375 |
283899 | INO80E | S016 | Human | Liver | HCC | 1.68e-20 | 9.14e-01 | 0.2243 |
283899 | INO80E | S027 | Human | Liver | HCC | 5.33e-15 | 1.04e+00 | 0.2446 |
283899 | INO80E | S028 | Human | Liver | HCC | 5.54e-28 | 1.18e+00 | 0.2503 |
283899 | INO80E | S029 | Human | Liver | HCC | 1.24e-24 | 1.17e+00 | 0.2581 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:000632517 | Esophagus | ESCC | chromatin organization | 240/8552 | 409/18723 | 6.52e-08 | 1.14e-06 | 240 |
GO:00063101 | Esophagus | ESCC | DNA recombination | 168/8552 | 305/18723 | 5.58e-04 | 3.05e-03 | 168 |
GO:000632511 | Liver | HCC | chromatin organization | 206/7958 | 409/18723 | 7.23e-04 | 4.41e-03 | 206 |
GO:0006310 | Oral cavity | OSCC | DNA recombination | 147/7305 | 305/18723 | 6.33e-04 | 3.56e-03 | 147 |
GO:000632510 | Oral cavity | OSCC | chromatin organization | 190/7305 | 409/18723 | 1.17e-03 | 5.97e-03 | 190 |
GO:000632519 | Skin | cSCC | chromatin organization | 147/4864 | 409/18723 | 4.41e-06 | 6.52e-05 | 147 |
GO:000633812 | Skin | cSCC | chromatin remodeling | 94/4864 | 255/18723 | 7.58e-05 | 7.26e-04 | 94 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
INO80E | SNV | Missense_Mutation | c.706N>A | p.Asp236Asn | p.D236N | Q8NBZ0 | protein_coding | tolerated(0.11) | probably_damaging(0.982) | TCGA-C5-A1MK-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | carboplatin | PD | |
INO80E | deletion | Frame_Shift_Del | rs759306300 | c.633delC | p.Thr212ArgfsTer3 | p.T212Rfs*3 | Q8NBZ0 | protein_coding | TCGA-VS-A9UJ-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | PD | ||
INO80E | SNV | Missense_Mutation | rs145127821 | c.478C>T | p.Arg160Trp | p.R160W | Q8NBZ0 | protein_coding | deleterious(0) | benign(0.082) | TCGA-AZ-6601-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
INO80E | SNV | Missense_Mutation | c.481G>A | p.Glu161Lys | p.E161K | Q8NBZ0 | protein_coding | tolerated(0.17) | benign(0.043) | TCGA-CK-4951-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | |
INO80E | SNV | Missense_Mutation | c.425N>A | p.Pro142His | p.P142H | Q8NBZ0 | protein_coding | deleterious(0.01) | probably_damaging(0.979) | TCGA-G4-6304-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Chemotherapy | fluorouracil | PD | |
INO80E | deletion | Frame_Shift_Del | c.531delC | p.Asp178ThrfsTer8 | p.D178Tfs*8 | Q8NBZ0 | protein_coding | TCGA-A6-3809-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |||
INO80E | deletion | Frame_Shift_Del | c.308delG | p.Gly103AlafsTer28 | p.G103Afs*28 | Q8NBZ0 | protein_coding | TCGA-A6-6780-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |||
INO80E | deletion | Frame_Shift_Del | rs759306300 | c.625delN | p.Thr212ArgfsTer3 | p.T212Rfs*3 | Q8NBZ0 | protein_coding | TCGA-AA-3811-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD | ||
INO80E | deletion | Frame_Shift_Del | rs759306300 | c.633delC | p.Thr212ArgfsTer3 | p.T212Rfs*3 | Q8NBZ0 | protein_coding | TCGA-AA-3845-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD | ||
INO80E | deletion | Frame_Shift_Del | rs759306300 | c.633delC | p.Thr212ArgfsTer3 | p.T212Rfs*3 | Q8NBZ0 | protein_coding | TCGA-AD-5900-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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