![]() |
|||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Gene: HNF4G |
Gene summary for HNF4G |
![]() |
Gene information | Species | Human | Gene symbol | HNF4G | Gene ID | 3174 |
Gene name | hepatocyte nuclear factor 4 gamma | |
Gene Alias | NR2A2 | |
Cytomap | 8q21.13 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q14541 |
Top |
Malignant transformation analysis |
![]() |
![]() |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
3174 | HNF4G | Pat08-B | Human | Stomach | GC | 2.50e-02 | 2.98e-01 | 0.0182 |
3174 | HNF4G | Pat09-B | Human | Stomach | GC | 4.11e-05 | 2.09e-01 | -0.0359 |
3174 | HNF4G | Pat10-B | Human | Stomach | GC | 3.93e-05 | 4.41e-01 | 0.084 |
3174 | HNF4G | Pat11-B | Human | Stomach | GC | 1.81e-04 | 2.01e-01 | -0.182 |
3174 | HNF4G | Pat12-B | Human | Stomach | GC | 8.06e-09 | 2.65e-01 | 0.0325 |
3174 | HNF4G | Pat13-B | Human | Stomach | GC | 9.43e-08 | 3.09e-01 | 0.0555 |
3174 | HNF4G | Pat15-B | Human | Stomach | GC | 2.82e-04 | 1.80e-01 | -0.0778 |
3174 | HNF4G | Pat16-B | Human | Stomach | GC | 7.50e-08 | 3.18e-01 | 0.1918 |
3174 | HNF4G | Pat17-B | Human | Stomach | GC | 4.36e-05 | 2.34e-01 | 0.3109 |
3174 | HNF4G | Pat18-B | Human | Stomach | GC | 2.24e-15 | 3.50e-01 | -0.0432 |
3174 | HNF4G | Pat19-B | Human | Stomach | GC | 1.07e-07 | 2.82e-01 | 0.0826 |
3174 | HNF4G | Pat22-B | Human | Stomach | GC | 1.27e-21 | 2.90e-01 | -0.1042 |
3174 | HNF4G | Pat24-B | Human | Stomach | GC | 1.33e-02 | 1.68e-01 | -0.1184 |
3174 | HNF4G | Pat25-A | Human | Stomach | CAG with IM | 1.59e-16 | 1.83e-01 | -0.1648 |
3174 | HNF4G | Pat26-A | Human | Stomach | CSG | 1.79e-08 | 1.22e-01 | -0.2402 |
3174 | HNF4G | Pat28-A | Human | Stomach | CSG | 4.78e-05 | 1.74e-01 | -0.2594 |
3174 | HNF4G | Pat29-A | Human | Stomach | CAG with IM | 2.41e-02 | 2.36e-01 | -0.2769 |
Page: 1 2 3 4 |
![]() |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
![]() |
![]() |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
![]() |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0030522 | Colorectum | AD | intracellular receptor signaling pathway | 87/3918 | 265/18723 | 3.69e-06 | 1.03e-04 | 87 |
GO:00305221 | Colorectum | SER | intracellular receptor signaling pathway | 63/2897 | 265/18723 | 2.47e-04 | 4.20e-03 | 63 |
GO:00305222 | Colorectum | MSS | intracellular receptor signaling pathway | 84/3467 | 265/18723 | 1.47e-07 | 6.79e-06 | 84 |
GO:00305223 | Colorectum | FAP | intracellular receptor signaling pathway | 67/2622 | 265/18723 | 6.84e-07 | 3.28e-05 | 67 |
GO:00305224 | Colorectum | CRC | intracellular receptor signaling pathway | 61/2078 | 265/18723 | 2.00e-08 | 3.23e-06 | 61 |
GO:00305226 | Liver | NAFLD | intracellular receptor signaling pathway | 55/1882 | 265/18723 | 1.39e-07 | 1.03e-05 | 55 |
GO:003052212 | Liver | Cirrhotic | intracellular receptor signaling pathway | 105/4634 | 265/18723 | 5.44e-08 | 1.69e-06 | 105 |
GO:003052222 | Liver | HCC | intracellular receptor signaling pathway | 171/7958 | 265/18723 | 3.00e-13 | 1.61e-11 | 171 |
GO:00305225 | Stomach | GC | intracellular receptor signaling pathway | 28/1159 | 265/18723 | 4.04e-03 | 3.39e-02 | 28 |
GO:003052211 | Stomach | CAG with IM | intracellular receptor signaling pathway | 28/1050 | 265/18723 | 9.76e-04 | 1.26e-02 | 28 |
GO:003052221 | Stomach | CSG | intracellular receptor signaling pathway | 28/1034 | 265/18723 | 7.73e-04 | 1.06e-02 | 28 |
Page: 1 |
![]() |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
Top |
Cell-cell communication analysis |
![]() |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
![]() |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
![]() |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
HNF4G | SNV | Missense_Mutation | rs772036366 | c.223N>T | p.Arg75Cys | p.R75C | Q14541 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-D8-A1J8-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | nolvadex | SD |
HNF4G | SNV | Missense_Mutation | c.1249C>G | p.Gln417Glu | p.Q417E | Q14541 | protein_coding | tolerated(0.54) | benign(0.01) | TCGA-E9-A22B-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | tamoxiphen | SD | |
HNF4G | insertion | Frame_Shift_Ins | novel | c.189_190insGTTC | p.Ser64ValfsTer5 | p.S64Vfs*5 | Q14541 | protein_coding | TCGA-AR-A0U0-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
HNF4G | insertion | Frame_Shift_Ins | novel | c.78_79insCTTCAGATAAGGCTATTCCATGAAGCATTCCAAGATTATCACAAGG | p.Asn27LeufsTer19 | p.N27Lfs*19 | Q14541 | protein_coding | TCGA-BH-A0HU-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | docetaxel | SD | ||
HNF4G | SNV | Missense_Mutation | rs183146707 | c.916N>A | p.Gly306Ser | p.G306S | Q14541 | protein_coding | tolerated(1) | benign(0.003) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
HNF4G | SNV | Missense_Mutation | rs766767221 | c.607N>A | p.Asp203Asn | p.D203N | Q14541 | protein_coding | deleterious(0.05) | benign(0.165) | TCGA-AA-3672-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
HNF4G | SNV | Missense_Mutation | rs755923251 | c.874N>A | p.Asp292Asn | p.D292N | Q14541 | protein_coding | tolerated(0.2) | benign(0.005) | TCGA-AA-3672-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
HNF4G | SNV | Missense_Mutation | novel | c.1077N>T | p.Gln359His | p.Q359H | Q14541 | protein_coding | deleterious(0.05) | benign(0.027) | TCGA-AA-3947-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
HNF4G | SNV | Missense_Mutation | c.66N>T | p.Met22Ile | p.M22I | Q14541 | protein_coding | tolerated(0.16) | benign(0.001) | TCGA-CM-4746-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD | |
HNF4G | SNV | Missense_Mutation | c.67N>G | p.Gln23Glu | p.Q23E | Q14541 | protein_coding | tolerated(0.17) | benign(0.007) | TCGA-CM-4746-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
Page: 1 2 3 4 5 6 7 |
Top |
Related drugs of malignant transformation related genes |
![]() |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
Page: 1 |