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Gene: ALDH4A1 |
Gene summary for ALDH4A1 |
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Gene information | Species | Human | Gene symbol | ALDH4A1 | Gene ID | 8659 |
Gene name | aldehyde dehydrogenase 4 family member A1 | |
Gene Alias | ALDH4 | |
Cytomap | 1p36.13 | |
Gene Type | protein-coding | GO ID | GO:0006082 | UniProtAcc | P30038 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
8659 | ALDH4A1 | Pt13.b | Human | Liver | HCC | 8.97e-13 | 1.43e-01 | 0.0251 |
8659 | ALDH4A1 | Pt14.a | Human | Liver | HCC | 3.12e-07 | 5.17e-01 | 0.0169 |
8659 | ALDH4A1 | Pt14.b | Human | Liver | HCC | 3.17e-03 | 2.34e-01 | 0.018 |
8659 | ALDH4A1 | S014 | Human | Liver | HCC | 2.42e-24 | 9.09e-01 | 0.2254 |
8659 | ALDH4A1 | S015 | Human | Liver | HCC | 2.00e-25 | 1.54e+00 | 0.2375 |
8659 | ALDH4A1 | S016 | Human | Liver | HCC | 3.48e-27 | 8.92e-01 | 0.2243 |
8659 | ALDH4A1 | S027 | Human | Liver | HCC | 1.24e-15 | 1.31e+00 | 0.2446 |
8659 | ALDH4A1 | S028 | Human | Liver | HCC | 2.98e-34 | 1.36e+00 | 0.2503 |
8659 | ALDH4A1 | S029 | Human | Liver | HCC | 5.39e-28 | 1.53e+00 | 0.2581 |
8659 | ALDH4A1 | C04 | Human | Oral cavity | OSCC | 1.12e-11 | 6.38e-01 | 0.2633 |
8659 | ALDH4A1 | C21 | Human | Oral cavity | OSCC | 2.14e-10 | 3.74e-01 | 0.2678 |
8659 | ALDH4A1 | C30 | Human | Oral cavity | OSCC | 4.17e-19 | 8.71e-01 | 0.3055 |
8659 | ALDH4A1 | C43 | Human | Oral cavity | OSCC | 2.18e-05 | 2.25e-01 | 0.1704 |
8659 | ALDH4A1 | C46 | Human | Oral cavity | OSCC | 1.41e-05 | 2.68e-01 | 0.1673 |
8659 | ALDH4A1 | C51 | Human | Oral cavity | OSCC | 1.51e-14 | 7.38e-01 | 0.2674 |
8659 | ALDH4A1 | C06 | Human | Oral cavity | OSCC | 3.16e-05 | 7.42e-01 | 0.2699 |
8659 | ALDH4A1 | C08 | Human | Oral cavity | OSCC | 1.08e-02 | 5.22e-02 | 0.1919 |
8659 | ALDH4A1 | LP15 | Human | Oral cavity | LP | 1.84e-06 | 1.08e+00 | 0.2174 |
8659 | ALDH4A1 | SYSMH1 | Human | Oral cavity | OSCC | 7.84e-10 | 1.78e-01 | 0.1127 |
8659 | ALDH4A1 | SYSMH2 | Human | Oral cavity | OSCC | 1.24e-11 | 3.07e-01 | 0.2326 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0006091 | Colorectum | AD | generation of precursor metabolites and energy | 209/3918 | 490/18723 | 3.17e-28 | 6.61e-25 | 209 |
GO:0022900 | Colorectum | AD | electron transport chain | 89/3918 | 175/18723 | 1.42e-18 | 8.91e-16 | 89 |
GO:0044282 | Colorectum | AD | small molecule catabolic process | 118/3918 | 376/18723 | 1.05e-06 | 3.55e-05 | 118 |
GO:0016054 | Colorectum | AD | organic acid catabolic process | 73/3918 | 240/18723 | 3.20e-04 | 3.81e-03 | 73 |
GO:0006575 | Colorectum | AD | cellular modified amino acid metabolic process | 59/3918 | 188/18723 | 4.80e-04 | 5.27e-03 | 59 |
GO:0043648 | Colorectum | AD | dicarboxylic acid metabolic process | 34/3918 | 96/18723 | 7.22e-04 | 7.28e-03 | 34 |
GO:0046395 | Colorectum | AD | carboxylic acid catabolic process | 70/3918 | 236/18723 | 9.06e-04 | 8.71e-03 | 70 |
GO:0006520 | Colorectum | AD | cellular amino acid metabolic process | 81/3918 | 284/18723 | 1.37e-03 | 1.19e-02 | 81 |
GO:00060911 | Colorectum | SER | generation of precursor metabolites and energy | 168/2897 | 490/18723 | 1.39e-25 | 1.70e-22 | 168 |
GO:00229001 | Colorectum | SER | electron transport chain | 77/2897 | 175/18723 | 1.77e-19 | 1.36e-16 | 77 |
GO:00442821 | Colorectum | SER | small molecule catabolic process | 87/2897 | 376/18723 | 5.31e-05 | 1.27e-03 | 87 |
GO:00160541 | Colorectum | SER | organic acid catabolic process | 53/2897 | 240/18723 | 4.04e-03 | 3.30e-02 | 53 |
GO:00065201 | Colorectum | SER | cellular amino acid metabolic process | 61/2897 | 284/18723 | 4.20e-03 | 3.41e-02 | 61 |
GO:00060912 | Colorectum | MSS | generation of precursor metabolites and energy | 186/3467 | 490/18723 | 1.14e-24 | 2.15e-21 | 186 |
GO:00229002 | Colorectum | MSS | electron transport chain | 83/3467 | 175/18723 | 2.06e-18 | 1.17e-15 | 83 |
GO:00065751 | Colorectum | MSS | cellular modified amino acid metabolic process | 55/3467 | 188/18723 | 2.16e-04 | 3.01e-03 | 55 |
GO:00442822 | Colorectum | MSS | small molecule catabolic process | 94/3467 | 376/18723 | 9.85e-04 | 9.86e-03 | 94 |
GO:00160542 | Colorectum | MSS | organic acid catabolic process | 61/3467 | 240/18723 | 4.72e-03 | 3.31e-02 | 61 |
GO:0006091110 | Esophagus | ESCC | generation of precursor metabolites and energy | 331/8552 | 490/18723 | 3.86e-23 | 8.45e-21 | 331 |
GO:0022900110 | Esophagus | ESCC | electron transport chain | 133/8552 | 175/18723 | 2.18e-16 | 1.67e-14 | 133 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa00330 | Colorectum | AD | Arginine and proline metabolism | 23/2092 | 50/8465 | 8.27e-04 | 5.90e-03 | 3.76e-03 | 23 |
hsa003301 | Colorectum | AD | Arginine and proline metabolism | 23/2092 | 50/8465 | 8.27e-04 | 5.90e-03 | 3.76e-03 | 23 |
hsa003302 | Colorectum | SER | Arginine and proline metabolism | 17/1580 | 50/8465 | 7.12e-03 | 3.77e-02 | 2.74e-02 | 17 |
hsa003303 | Colorectum | SER | Arginine and proline metabolism | 17/1580 | 50/8465 | 7.12e-03 | 3.77e-02 | 2.74e-02 | 17 |
hsa003304 | Colorectum | MSS | Arginine and proline metabolism | 23/1875 | 50/8465 | 1.52e-04 | 1.24e-03 | 7.61e-04 | 23 |
hsa003305 | Colorectum | MSS | Arginine and proline metabolism | 23/1875 | 50/8465 | 1.52e-04 | 1.24e-03 | 7.61e-04 | 23 |
hsa003308 | Liver | Cirrhotic | Arginine and proline metabolism | 25/2530 | 50/8465 | 2.18e-03 | 9.41e-03 | 5.80e-03 | 25 |
hsa0033011 | Liver | Cirrhotic | Arginine and proline metabolism | 25/2530 | 50/8465 | 2.18e-03 | 9.41e-03 | 5.80e-03 | 25 |
hsa0033021 | Liver | HCC | Arginine and proline metabolism | 33/4020 | 50/8465 | 6.28e-03 | 1.77e-02 | 9.83e-03 | 33 |
hsa0033031 | Liver | HCC | Arginine and proline metabolism | 33/4020 | 50/8465 | 6.28e-03 | 1.77e-02 | 9.83e-03 | 33 |
hsa0033010 | Oral cavity | OSCC | Arginine and proline metabolism | 30/3704 | 50/8465 | 1.50e-02 | 3.26e-02 | 1.66e-02 | 30 |
hsa0033013 | Oral cavity | OSCC | Arginine and proline metabolism | 30/3704 | 50/8465 | 1.50e-02 | 3.26e-02 | 1.66e-02 | 30 |
hsa0033023 | Oral cavity | LP | Arginine and proline metabolism | 26/2418 | 50/8465 | 3.94e-04 | 2.08e-03 | 1.34e-03 | 26 |
hsa0033033 | Oral cavity | LP | Arginine and proline metabolism | 26/2418 | 50/8465 | 3.94e-04 | 2.08e-03 | 1.34e-03 | 26 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
ALDH4A1 | SNV | Missense_Mutation | novel | c.1449N>A | p.Phe483Leu | p.F483L | P30038 | protein_coding | deleterious(0.02) | probably_damaging(0.973) | TCGA-B6-A3ZX-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Chemotherapy | cyclophosphamide | PD |
ALDH4A1 | SNV | Missense_Mutation | novel | c.842N>A | p.Gly281Asp | p.G281D | P30038 | protein_coding | deleterious(0) | probably_damaging(0.991) | TCGA-EA-A410-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
ALDH4A1 | SNV | Missense_Mutation | rs142969512 | c.1048N>A | p.Ala350Thr | p.A350T | P30038 | protein_coding | deleterious(0) | probably_damaging(0.918) | TCGA-AA-3811-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD |
ALDH4A1 | SNV | Missense_Mutation | c.1469T>C | p.Val490Ala | p.V490A | P30038 | protein_coding | tolerated(0.11) | benign(0.021) | TCGA-AA-3864-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
ALDH4A1 | SNV | Missense_Mutation | novel | c.214N>A | p.Glu72Lys | p.E72K | P30038 | protein_coding | tolerated(0.1) | benign(0.056) | TCGA-AA-A010-01 | Colorectum | colon adenocarcinoma | Female | <65 | I/II | Chemotherapy | folinic | CR |
ALDH4A1 | SNV | Missense_Mutation | rs142969512 | c.1048G>A | p.Ala350Thr | p.A350T | P30038 | protein_coding | deleterious(0) | probably_damaging(0.918) | TCGA-AD-6964-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | folfox | PD |
ALDH4A1 | SNV | Missense_Mutation | novel | c.1079N>C | p.Leu360Pro | p.L360P | P30038 | protein_coding | deleterious(0) | probably_damaging(0.987) | TCGA-AZ-6598-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
ALDH4A1 | SNV | Missense_Mutation | rs139487658 | c.370C>T | p.Arg124Trp | p.R124W | P30038 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-AZ-6601-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
ALDH4A1 | insertion | Frame_Shift_Ins | novel | c.569dupC | p.Ser191GlufsTer21 | p.S191Efs*21 | P30038 | protein_coding | TCGA-A6-5661-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
ALDH4A1 | SNV | Missense_Mutation | novel | c.650N>A | p.Gly217Asp | p.G217D | P30038 | protein_coding | deleterious(0) | probably_damaging(0.994) | TCGA-A5-A0GW-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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