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Gene: AKIRIN1 |
Gene summary for AKIRIN1 |
 Gene summary. |
| Gene information | Species | Human | Gene symbol | AKIRIN1 | Gene ID | 79647 |
| Gene name | akirin 1 | |
| Gene Alias | C1orf108 | |
| Cytomap | 1p34.3 | |
| Gene Type | protein-coding | GO ID | GO:0002376 | UniProtAcc | Q9H9L7 |
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Malignant transformation analysis |
| Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
| Malignant transformation involving gene list. |
| Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
| 79647 | AKIRIN1 | S43 | Human | Liver | Cirrhotic | 1.06e-02 | -2.07e-01 | -0.0187 |
| 79647 | AKIRIN1 | HCC1_Meng | Human | Liver | HCC | 8.52e-77 | 8.50e-02 | 0.0246 |
| 79647 | AKIRIN1 | HCC2_Meng | Human | Liver | HCC | 1.13e-13 | -1.13e-01 | 0.0107 |
| 79647 | AKIRIN1 | HCC2 | Human | Liver | HCC | 1.33e-18 | 4.55e+00 | 0.5341 |
| 79647 | AKIRIN1 | Pt13.b | Human | Liver | HCC | 4.30e-05 | 3.90e-02 | 0.0251 |
| 79647 | AKIRIN1 | S014 | Human | Liver | HCC | 1.10e-21 | 1.21e+00 | 0.2254 |
| 79647 | AKIRIN1 | S015 | Human | Liver | HCC | 6.68e-19 | 1.40e+00 | 0.2375 |
| 79647 | AKIRIN1 | S016 | Human | Liver | HCC | 2.16e-27 | 1.43e+00 | 0.2243 |
| 79647 | AKIRIN1 | S027 | Human | Liver | HCC | 5.67e-09 | 1.36e+00 | 0.2446 |
| 79647 | AKIRIN1 | S028 | Human | Liver | HCC | 5.41e-17 | 1.26e+00 | 0.2503 |
| 79647 | AKIRIN1 | S029 | Human | Liver | HCC | 4.67e-19 | 1.51e+00 | 0.2581 |
| 79647 | AKIRIN1 | C04 | Human | Oral cavity | OSCC | 7.37e-21 | 1.07e+00 | 0.2633 |
| 79647 | AKIRIN1 | C21 | Human | Oral cavity | OSCC | 3.77e-16 | 7.60e-01 | 0.2678 |
| 79647 | AKIRIN1 | C30 | Human | Oral cavity | OSCC | 1.83e-33 | 1.57e+00 | 0.3055 |
| 79647 | AKIRIN1 | C43 | Human | Oral cavity | OSCC | 9.11e-11 | 4.22e-01 | 0.1704 |
| 79647 | AKIRIN1 | C46 | Human | Oral cavity | OSCC | 8.06e-10 | 5.35e-01 | 0.1673 |
| 79647 | AKIRIN1 | C51 | Human | Oral cavity | OSCC | 2.96e-06 | 6.22e-01 | 0.2674 |
| 79647 | AKIRIN1 | C57 | Human | Oral cavity | OSCC | 1.82e-10 | 5.80e-01 | 0.1679 |
| 79647 | AKIRIN1 | C06 | Human | Oral cavity | OSCC | 4.83e-03 | 8.87e-01 | 0.2699 |
| 79647 | AKIRIN1 | C08 | Human | Oral cavity | OSCC | 7.80e-16 | 5.43e-01 | 0.1919 |
| Page: 1 2 3 4 5 6 7 |
| Transcriptomic changes along malignancy continuum. |
| Tissue | Expression Dynamics | Abbreviation |
| Esophagus |  | ESCC: Esophageal squamous cell carcinoma |
| HGIN: High-grade intraepithelial neoplasias | ||
| LGIN: Low-grade intraepithelial neoplasias | ||
| Liver |  | HCC: Hepatocellular carcinoma |
| NAFLD: Non-alcoholic fatty liver disease | ||
| Oral Cavity |  | EOLP: Erosive Oral lichen planus |
| LP: leukoplakia | ||
| NEOLP: Non-erosive oral lichen planus | ||
| OSCC: Oral squamous cell carcinoma | ||
| Prostate |  | BPH: Benign Prostatic Hyperplasia |
| Skin |  | AK: Actinic keratosis |
| cSCC: Cutaneous squamous cell carcinoma | ||
| SCCIS:squamous cell carcinoma in situ | ||
| Thyroid |  | ATC: Anaplastic thyroid cancer |
| HT: Hashimoto's thyroiditis | ||
| PTC: Papillary thyroid cancer |
| ∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
| Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
| Figure of enriched GO biological processes. |
| Tissue | Disease Stage | Enriched GO biological Processes |
| Colorectum | AD |  |
| Colorectum | SER |  |
| Colorectum | MSS |  |
| Colorectum | MSI-H |  |
| Colorectum | FAP |  |
| ∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
| Page: 1 2 3 4 5 6 7 8 9 |
| Enriched GO biological processes. |
| GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
| GO:00605379 | Esophagus | HGIN | muscle tissue development | 76/2587 | 403/18723 | 2.67e-03 | 2.63e-02 | 76 |
| GO:00147068 | Esophagus | HGIN | striated muscle tissue development | 72/2587 | 384/18723 | 3.94e-03 | 3.56e-02 | 72 |
| GO:006049117 | Esophagus | HGIN | regulation of cell projection assembly | 39/2587 | 188/18723 | 5.61e-03 | 4.57e-02 | 39 |
| GO:003109910 | Esophagus | ESCC | regeneration | 122/8552 | 198/18723 | 4.26e-06 | 4.57e-05 | 122 |
| GO:003134616 | Esophagus | ESCC | positive regulation of cell projection organization | 201/8552 | 353/18723 | 1.19e-05 | 1.11e-04 | 201 |
| GO:006049118 | Esophagus | ESCC | regulation of cell projection assembly | 110/8552 | 188/18723 | 2.60e-04 | 1.58e-03 | 110 |
| GO:012003218 | Esophagus | ESCC | regulation of plasma membrane bounded cell projection assembly | 108/8552 | 186/18723 | 4.37e-04 | 2.46e-03 | 108 |
| GO:01200347 | Esophagus | ESCC | positive regulation of plasma membrane bounded cell projection assembly | 64/8552 | 105/18723 | 1.15e-03 | 5.70e-03 | 64 |
| GO:00454454 | Esophagus | ESCC | myoblast differentiation | 52/8552 | 84/18723 | 1.98e-03 | 8.90e-03 | 52 |
| GO:006053716 | Esophagus | ESCC | muscle tissue development | 211/8552 | 403/18723 | 3.84e-03 | 1.56e-02 | 211 |
| GO:00330025 | Esophagus | ESCC | muscle cell proliferation | 134/8552 | 248/18723 | 4.80e-03 | 1.86e-02 | 134 |
| GO:000268515 | Esophagus | ESCC | regulation of leukocyte migration | 114/8552 | 210/18723 | 7.26e-03 | 2.63e-02 | 114 |
| GO:009758116 | Esophagus | ESCC | lamellipodium organization | 53/8552 | 90/18723 | 7.92e-03 | 2.82e-02 | 53 |
| GO:190274515 | Esophagus | ESCC | positive regulation of lamellipodium organization | 24/8552 | 37/18723 | 1.46e-02 | 4.74e-02 | 24 |
| GO:001470615 | Esophagus | ESCC | striated muscle tissue development | 197/8552 | 384/18723 | 1.46e-02 | 4.74e-02 | 197 |
| GO:009758111 | Liver | Cirrhotic | lamellipodium organization | 40/4634 | 90/18723 | 3.48e-05 | 4.26e-04 | 40 |
| GO:003109911 | Liver | Cirrhotic | regeneration | 71/4634 | 198/18723 | 3.02e-04 | 2.65e-03 | 71 |
| GO:001059211 | Liver | Cirrhotic | positive regulation of lamellipodium assembly | 16/4634 | 29/18723 | 4.36e-04 | 3.55e-03 | 16 |
| GO:190274511 | Liver | Cirrhotic | positive regulation of lamellipodium organization | 19/4634 | 37/18723 | 4.39e-04 | 3.57e-03 | 19 |
| GO:190274311 | Liver | Cirrhotic | regulation of lamellipodium organization | 25/4634 | 54/18723 | 4.63e-04 | 3.75e-03 | 25 |
| Page: 1 2 3 4 5 6 7 8 9 10 |
| Enriched KEGG pathways. |
| Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
| Page: 1 |
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Cell-cell communication analysis |
| Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
| Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
| Page: 1 |
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Single-cell gene regulatory network inference analysis |
| Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
| TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
| ∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
| Page: 1 |
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Somatic mutation of malignant transformation related genes |
| Annotation of somatic variants for genes involved in malignant transformation |
| Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
| AKIRIN1 | SNV | Missense_Mutation | c.295N>G | p.Gln99Glu | p.Q99E | Q9H9L7 | protein_coding | tolerated(0.1) | probably_damaging(0.99) | TCGA-E9-A3QA-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
| AKIRIN1 | SNV | Missense_Mutation | novel | c.469G>A | p.Glu157Lys | p.E157K | Q9H9L7 | protein_coding | deleterious(0.01) | probably_damaging(0.962) | TCGA-DS-A1OB-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | carboplatin | PD |
| AKIRIN1 | SNV | Missense_Mutation | rs753878747 | c.458G>A | p.Arg153Gln | p.R153Q | Q9H9L7 | protein_coding | tolerated(0.09) | possibly_damaging(0.811) | TCGA-MA-AA42-01 | Cervix | cervical & endocervical cancer | Female | >=65 | I/II | Unknown | Unknown | SD |
| AKIRIN1 | SNV | Missense_Mutation | novel | c.567N>A | p.Ser189Arg | p.S189R | Q9H9L7 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-B5-A3FA-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
| AKIRIN1 | SNV | Missense_Mutation | rs764613354 | c.225A>C | p.Gln75His | p.Q75H | Q9H9L7 | protein_coding | deleterious(0) | possibly_damaging(0.805) | TCGA-FI-A2D0-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
| AKIRIN1 | SNV | Missense_Mutation | novel | c.428N>T | p.Arg143Leu | p.R143L | Q9H9L7 | protein_coding | deleterious(0) | possibly_damaging(0.806) | TCGA-QS-A744-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | III/IV | Chemotherapy | carboplatin | SD |
| AKIRIN1 | SNV | Missense_Mutation | rs781305153 | c.314C>T | p.Ser105Leu | p.S105L | Q9H9L7 | protein_coding | tolerated(0.16) | benign(0.254) | TCGA-FV-A23B-01 | Liver | liver hepatocellular carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
| AKIRIN1 | SNV | Missense_Mutation | novel | c.256C>A | p.Arg86Ser | p.R86S | Q9H9L7 | protein_coding | deleterious(0) | probably_damaging(0.91) | TCGA-86-7701-01 | Lung | lung adenocarcinoma | Male | >=65 | III/IV | Chemotherapy | etoposide | PD |
| AKIRIN1 | SNV | Missense_Mutation | c.180N>T | p.Gln60His | p.Q60H | Q9H9L7 | protein_coding | tolerated(0.09) | benign(0.346) | TCGA-33-4532-01 | Lung | lung squamous cell carcinoma | Male | >=65 | I/II | Unknown | Unknown | SD |
| Page: 1 |
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Related drugs of malignant transformation related genes |
| Identification of chemicals and drugs interact with genes involved in malignant transfromation |
| (DGIdb 4.0) |
| Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
| Page: 1 |
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