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Gene: ZNF770 |
Gene summary for ZNF770 |
Gene summary. |
Gene information | Species | Human | Gene symbol | ZNF770 | Gene ID | 54989 |
Gene name | zinc finger protein 770 | |
Gene Alias | PRO1914 | |
Cytomap | 15q14 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | Q6IQ21 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
54989 | ZNF770 | P52T-E | Human | Esophagus | ESCC | 1.20e-19 | 3.97e-01 | 0.1555 |
54989 | ZNF770 | P54T-E | Human | Esophagus | ESCC | 1.89e-08 | 1.24e-01 | 0.0975 |
54989 | ZNF770 | P56T-E | Human | Esophagus | ESCC | 1.44e-05 | 7.27e-01 | 0.1613 |
54989 | ZNF770 | P57T-E | Human | Esophagus | ESCC | 4.23e-11 | 4.89e-02 | 0.0926 |
54989 | ZNF770 | P61T-E | Human | Esophagus | ESCC | 1.83e-12 | 1.13e-01 | 0.099 |
54989 | ZNF770 | P62T-E | Human | Esophagus | ESCC | 3.01e-15 | 2.61e-01 | 0.1302 |
54989 | ZNF770 | P65T-E | Human | Esophagus | ESCC | 1.06e-07 | 8.34e-02 | 0.0978 |
54989 | ZNF770 | P74T-E | Human | Esophagus | ESCC | 3.81e-19 | 3.69e-01 | 0.1479 |
54989 | ZNF770 | P75T-E | Human | Esophagus | ESCC | 4.09e-21 | 2.10e-01 | 0.1125 |
54989 | ZNF770 | P76T-E | Human | Esophagus | ESCC | 1.68e-17 | 2.50e-01 | 0.1207 |
54989 | ZNF770 | P79T-E | Human | Esophagus | ESCC | 5.39e-21 | 3.42e-01 | 0.1154 |
54989 | ZNF770 | P80T-E | Human | Esophagus | ESCC | 3.11e-19 | 7.55e-01 | 0.155 |
54989 | ZNF770 | P82T-E | Human | Esophagus | ESCC | 1.67e-07 | 3.85e-01 | 0.1072 |
54989 | ZNF770 | P83T-E | Human | Esophagus | ESCC | 7.70e-19 | 4.19e-01 | 0.1738 |
54989 | ZNF770 | P84T-E | Human | Esophagus | ESCC | 1.24e-02 | 2.73e-01 | 0.0933 |
54989 | ZNF770 | P89T-E | Human | Esophagus | ESCC | 9.95e-04 | 2.53e-01 | 0.1752 |
54989 | ZNF770 | P91T-E | Human | Esophagus | ESCC | 8.06e-07 | 7.85e-01 | 0.1828 |
54989 | ZNF770 | P107T-E | Human | Esophagus | ESCC | 3.79e-24 | 5.26e-01 | 0.171 |
54989 | ZNF770 | P126T-E | Human | Esophagus | ESCC | 4.47e-02 | 3.18e-01 | 0.1125 |
54989 | ZNF770 | P127T-E | Human | Esophagus | ESCC | 1.24e-17 | 1.54e-01 | 0.0826 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
ZNF770 | SNV | Missense_Mutation | novel | c.73A>T | p.Arg25Trp | p.R25W | Q6IQ21 | protein_coding | deleterious(0) | probably_damaging(0.962) | TCGA-A7-A6VW-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicin | CR |
ZNF770 | SNV | Missense_Mutation | novel | c.2023N>T | p.His675Tyr | p.H675Y | Q6IQ21 | protein_coding | deleterious(0) | probably_damaging(0.997) | TCGA-AC-A3W7-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | femara | SD |
ZNF770 | SNV | Missense_Mutation | rs140429599 | c.1618G>C | p.Gly540Arg | p.G540R | Q6IQ21 | protein_coding | tolerated(0.1) | benign(0.125) | TCGA-AN-A0FW-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
ZNF770 | SNV | Missense_Mutation | novel | c.322C>G | p.Gln108Glu | p.Q108E | Q6IQ21 | protein_coding | tolerated(0.24) | benign(0.084) | TCGA-AQ-A7U7-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Targeted Molecular therapy | rituximab | CR |
ZNF770 | SNV | Missense_Mutation | rs768441646 | c.1877N>A | p.Arg626Gln | p.R626Q | Q6IQ21 | protein_coding | tolerated(1) | benign(0) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
ZNF770 | SNV | Missense_Mutation | novel | c.470N>C | p.Lys157Thr | p.K157T | Q6IQ21 | protein_coding | deleterious(0.01) | possibly_damaging(0.835) | TCGA-2W-A8YY-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Chemotherapy | cisplatin | CR |
ZNF770 | SNV | Missense_Mutation | novel | c.1610N>C | p.Val537Ala | p.V537A | Q6IQ21 | protein_coding | tolerated(0.12) | benign(0.003) | TCGA-ZJ-AAXA-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
ZNF770 | SNV | Missense_Mutation | c.1981N>G | p.Thr661Ala | p.T661A | Q6IQ21 | protein_coding | deleterious(0.01) | benign(0.056) | TCGA-A6-6141-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Chemotherapy | 5-fu | SD | |
ZNF770 | SNV | Missense_Mutation | c.1528N>G | p.Lys510Glu | p.K510E | Q6IQ21 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AA-3710-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
ZNF770 | SNV | Missense_Mutation | novel | c.1321N>C | p.Ser441Pro | p.S441P | Q6IQ21 | protein_coding | tolerated(0.15) | benign(0) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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