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Gene: TIMM22 |
Gene summary for TIMM22 |
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Gene information | Species | Human | Gene symbol | TIMM22 | Gene ID | 29928 |
Gene name | translocase of inner mitochondrial membrane 22 | |
Gene Alias | COXPD43 | |
Cytomap | 17p13.3 | |
Gene Type | protein-coding | GO ID | GO:0006605 | UniProtAcc | Q9Y584 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
29928 | TIMM22 | P49T-E | Human | Esophagus | ESCC | 1.49e-08 | 1.09e+00 | 0.1768 |
29928 | TIMM22 | P52T-E | Human | Esophagus | ESCC | 1.07e-23 | 4.63e-01 | 0.1555 |
29928 | TIMM22 | P54T-E | Human | Esophagus | ESCC | 1.51e-16 | 3.92e-01 | 0.0975 |
29928 | TIMM22 | P56T-E | Human | Esophagus | ESCC | 6.57e-07 | 1.05e+00 | 0.1613 |
29928 | TIMM22 | P57T-E | Human | Esophagus | ESCC | 3.68e-13 | 2.04e-01 | 0.0926 |
29928 | TIMM22 | P61T-E | Human | Esophagus | ESCC | 2.05e-20 | 3.30e-01 | 0.099 |
29928 | TIMM22 | P62T-E | Human | Esophagus | ESCC | 3.75e-28 | 5.34e-01 | 0.1302 |
29928 | TIMM22 | P65T-E | Human | Esophagus | ESCC | 1.20e-17 | 2.55e-01 | 0.0978 |
29928 | TIMM22 | P74T-E | Human | Esophagus | ESCC | 1.03e-29 | 8.74e-01 | 0.1479 |
29928 | TIMM22 | P75T-E | Human | Esophagus | ESCC | 3.08e-36 | 5.12e-01 | 0.1125 |
29928 | TIMM22 | P76T-E | Human | Esophagus | ESCC | 2.19e-22 | 3.90e-01 | 0.1207 |
29928 | TIMM22 | P79T-E | Human | Esophagus | ESCC | 4.97e-25 | 4.49e-01 | 0.1154 |
29928 | TIMM22 | P80T-E | Human | Esophagus | ESCC | 1.89e-28 | 8.95e-01 | 0.155 |
29928 | TIMM22 | P82T-E | Human | Esophagus | ESCC | 9.25e-07 | 5.56e-01 | 0.1072 |
29928 | TIMM22 | P83T-E | Human | Esophagus | ESCC | 2.94e-29 | 7.81e-01 | 0.1738 |
29928 | TIMM22 | P84T-E | Human | Esophagus | ESCC | 3.96e-06 | 3.15e-01 | 0.0933 |
29928 | TIMM22 | P89T-E | Human | Esophagus | ESCC | 6.05e-11 | 9.49e-01 | 0.1752 |
29928 | TIMM22 | P91T-E | Human | Esophagus | ESCC | 1.95e-06 | 8.40e-01 | 0.1828 |
29928 | TIMM22 | P107T-E | Human | Esophagus | ESCC | 4.08e-41 | 9.26e-01 | 0.171 |
29928 | TIMM22 | P126T-E | Human | Esophagus | ESCC | 3.98e-04 | 3.16e-01 | 0.1125 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:0072594110 | Esophagus | ESCC | establishment of protein localization to organelle | 311/8552 | 422/18723 | 3.02e-32 | 2.13e-29 | 311 |
GO:0006605111 | Esophagus | ESCC | protein targeting | 229/8552 | 314/18723 | 4.93e-23 | 1.01e-20 | 229 |
GO:0006839110 | Esophagus | ESCC | mitochondrial transport | 187/8552 | 254/18723 | 8.35e-20 | 9.81e-18 | 187 |
GO:0090150110 | Esophagus | ESCC | establishment of protein localization to membrane | 182/8552 | 260/18723 | 1.27e-15 | 8.19e-14 | 182 |
GO:0072655110 | Esophagus | ESCC | establishment of protein localization to mitochondrion | 97/8552 | 120/18723 | 2.17e-15 | 1.33e-13 | 97 |
GO:0070585110 | Esophagus | ESCC | protein localization to mitochondrion | 100/8552 | 125/18723 | 2.96e-15 | 1.77e-13 | 100 |
GO:000700619 | Esophagus | ESCC | mitochondrial membrane organization | 93/8552 | 116/18723 | 2.16e-14 | 1.11e-12 | 93 |
GO:0006626110 | Esophagus | ESCC | protein targeting to mitochondrion | 81/8552 | 100/18723 | 3.60e-13 | 1.67e-11 | 81 |
GO:005120515 | Esophagus | ESCC | protein insertion into membrane | 46/8552 | 57/18723 | 5.90e-08 | 1.04e-06 | 46 |
GO:00718069 | Esophagus | ESCC | protein transmembrane transport | 47/8552 | 59/18723 | 9.02e-08 | 1.51e-06 | 47 |
GO:009015118 | Esophagus | ESCC | establishment of protein localization to mitochondrial membrane | 26/8552 | 30/18723 | 3.79e-06 | 4.12e-05 | 26 |
GO:000700713 | Esophagus | ESCC | inner mitochondrial membrane organization | 31/8552 | 38/18723 | 5.93e-06 | 6.10e-05 | 31 |
GO:005120416 | Esophagus | ESCC | protein insertion into mitochondrial membrane | 21/8552 | 25/18723 | 9.12e-05 | 6.54e-04 | 21 |
GO:00450393 | Esophagus | ESCC | protein insertion into mitochondrial inner membrane | 11/8552 | 12/18723 | 1.26e-03 | 6.06e-03 | 11 |
GO:007259418 | Oral cavity | OSCC | establishment of protein localization to organelle | 284/7305 | 422/18723 | 1.50e-32 | 1.35e-29 | 284 |
GO:000660520 | Oral cavity | OSCC | protein targeting | 204/7305 | 314/18723 | 6.78e-21 | 1.13e-18 | 204 |
GO:000683918 | Oral cavity | OSCC | mitochondrial transport | 162/7305 | 254/18723 | 8.96e-16 | 6.52e-14 | 162 |
GO:009015018 | Oral cavity | OSCC | establishment of protein localization to membrane | 163/7305 | 260/18723 | 7.13e-15 | 4.47e-13 | 163 |
GO:007058518 | Oral cavity | OSCC | protein localization to mitochondrion | 91/7305 | 125/18723 | 1.60e-14 | 9.27e-13 | 91 |
GO:007265518 | Oral cavity | OSCC | establishment of protein localization to mitochondrion | 88/7305 | 120/18723 | 2.10e-14 | 1.19e-12 | 88 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
TIMM22 | SNV | Missense_Mutation | c.118N>T | p.Arg40Trp | p.R40W | Q9Y584 | protein_coding | tolerated(0.17) | benign(0) | TCGA-BH-A0HN-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | arimidex | SD | |
TIMM22 | SNV | Missense_Mutation | novel | c.172G>A | p.Glu58Lys | p.E58K | Q9Y584 | protein_coding | deleterious(0.01) | benign(0.409) | TCGA-JW-A5VL-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | SD |
TIMM22 | SNV | Missense_Mutation | c.322N>G | p.Thr108Ala | p.T108A | Q9Y584 | protein_coding | tolerated(0.22) | benign(0.044) | TCGA-AA-3510-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
TIMM22 | SNV | Missense_Mutation | novel | c.128A>C | p.Glu43Ala | p.E43A | Q9Y584 | protein_coding | tolerated(0.74) | benign(0.018) | TCGA-AA-3949-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
TIMM22 | SNV | Missense_Mutation | novel | c.517N>C | p.Lys173Gln | p.K173Q | Q9Y584 | protein_coding | deleterious(0.02) | benign(0.071) | TCGA-AA-A00N-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | PD |
TIMM22 | SNV | Missense_Mutation | novel | c.467N>G | p.Val156Gly | p.V156G | Q9Y584 | protein_coding | deleterious(0.01) | possibly_damaging(0.522) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
TIMM22 | SNV | Missense_Mutation | rs142652142 | c.274N>A | p.Ala92Thr | p.A92T | Q9Y584 | protein_coding | deleterious(0) | probably_damaging(0.999) | TCGA-CM-6162-01 | Colorectum | colon adenocarcinoma | Female | <65 | III/IV | Chemotherapy | oxaliplatin | SD |
TIMM22 | SNV | Missense_Mutation | c.121N>T | p.Leu41Phe | p.L41F | Q9Y584 | protein_coding | deleterious(0.05) | benign(0.033) | TCGA-AG-A02N-01 | Colorectum | rectum adenocarcinoma | Male | >=65 | I/II | Chemotherapy | folinic | CR | |
TIMM22 | SNV | Missense_Mutation | novel | c.305N>A | p.Pro102His | p.P102H | Q9Y584 | protein_coding | deleterious(0.01) | probably_damaging(0.938) | TCGA-A5-A0G1-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
TIMM22 | SNV | Missense_Mutation | rs372574724 | c.146N>A | p.Gly49Glu | p.G49E | Q9Y584 | protein_coding | tolerated(0.1) | possibly_damaging(0.784) | TCGA-AP-A1DK-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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