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Gene: PELP1 |
Gene summary for PELP1 |
Gene summary. |
Gene information | Species | Human | Gene symbol | PELP1 | Gene ID | 27043 |
Gene name | proline, glutamate and leucine rich protein 1 | |
Gene Alias | MNAR | |
Cytomap | 17p13.2 | |
Gene Type | protein-coding | GO ID | GO:0006139 | UniProtAcc | B4DEX7 |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
27043 | PELP1 | P49T-E | Human | Esophagus | ESCC | 4.98e-09 | 1.08e+00 | 0.1768 |
27043 | PELP1 | P52T-E | Human | Esophagus | ESCC | 2.56e-20 | 3.59e-01 | 0.1555 |
27043 | PELP1 | P54T-E | Human | Esophagus | ESCC | 4.73e-18 | 4.72e-01 | 0.0975 |
27043 | PELP1 | P56T-E | Human | Esophagus | ESCC | 5.48e-11 | 1.22e+00 | 0.1613 |
27043 | PELP1 | P57T-E | Human | Esophagus | ESCC | 2.69e-11 | 2.11e-01 | 0.0926 |
27043 | PELP1 | P61T-E | Human | Esophagus | ESCC | 7.35e-23 | 5.57e-01 | 0.099 |
27043 | PELP1 | P62T-E | Human | Esophagus | ESCC | 4.05e-27 | 5.78e-01 | 0.1302 |
27043 | PELP1 | P65T-E | Human | Esophagus | ESCC | 2.71e-19 | 3.37e-01 | 0.0978 |
27043 | PELP1 | P74T-E | Human | Esophagus | ESCC | 9.63e-23 | 7.49e-01 | 0.1479 |
27043 | PELP1 | P75T-E | Human | Esophagus | ESCC | 7.93e-21 | 5.11e-01 | 0.1125 |
27043 | PELP1 | P76T-E | Human | Esophagus | ESCC | 2.54e-19 | 4.27e-01 | 0.1207 |
27043 | PELP1 | P79T-E | Human | Esophagus | ESCC | 1.53e-25 | 4.67e-01 | 0.1154 |
27043 | PELP1 | P80T-E | Human | Esophagus | ESCC | 2.14e-26 | 7.38e-01 | 0.155 |
27043 | PELP1 | P82T-E | Human | Esophagus | ESCC | 2.74e-13 | 6.02e-01 | 0.1072 |
27043 | PELP1 | P83T-E | Human | Esophagus | ESCC | 5.02e-34 | 9.10e-01 | 0.1738 |
27043 | PELP1 | P84T-E | Human | Esophagus | ESCC | 2.95e-09 | 3.25e-01 | 0.0933 |
27043 | PELP1 | P89T-E | Human | Esophagus | ESCC | 2.31e-08 | 4.95e-01 | 0.1752 |
27043 | PELP1 | P91T-E | Human | Esophagus | ESCC | 1.22e-14 | 1.33e+00 | 0.1828 |
27043 | PELP1 | P104T-E | Human | Esophagus | ESCC | 4.09e-07 | 1.73e-01 | 0.0931 |
27043 | PELP1 | P107T-E | Human | Esophagus | ESCC | 9.12e-49 | 1.10e+00 | 0.171 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00436275 | Esophagus | ESCC | response to estrogen | 45/8552 | 75/18723 | 8.75e-03 | 3.08e-02 | 45 |
GO:0043627 | Liver | Cirrhotic | response to estrogen | 30/4634 | 75/18723 | 2.52e-03 | 1.51e-02 | 30 |
GO:00436271 | Liver | HCC | response to estrogen | 44/7958 | 75/18723 | 3.44e-03 | 1.55e-02 | 44 |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
PELP1 | SNV | Missense_Mutation | novel | c.834N>C | p.Leu278Phe | p.L278F | protein_coding | tolerated(0.71) | probably_damaging(0.923) | TCGA-5L-AAT1-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Hormone Therapy | letrozol | SD | |
PELP1 | SNV | Missense_Mutation | novel | c.787C>T | p.Leu263Phe | p.L263F | protein_coding | tolerated(0.18) | probably_damaging(0.986) | TCGA-A7-A6VX-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Chemotherapy | docetaxel | CR | |
PELP1 | SNV | Missense_Mutation | novel | c.3479N>G | p.Ala1160Gly | p.A1160G | protein_coding | deleterious_low_confidence(0) | probably_damaging(0.994) | TCGA-AC-A8OQ-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | |
PELP1 | SNV | Missense_Mutation | c.1961N>T | p.Ala654Val | p.A654V | protein_coding | tolerated(0.42) | possibly_damaging(0.743) | TCGA-B6-A0I9-01 | Breast | breast invasive carcinoma | Female | <65 | III/IV | Unknown | Unknown | PD | ||
PELP1 | SNV | Missense_Mutation | novel | c.1993N>C | p.Glu665Gln | p.E665Q | protein_coding | tolerated(0.26) | possibly_damaging(0.55) | TCGA-BH-A0B6-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
PELP1 | SNV | Missense_Mutation | rs774281042 | c.3091N>C | p.Thr1031Pro | p.T1031P | protein_coding | tolerated_low_confidence(0.18) | benign(0) | TCGA-BH-A1F5-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD | |
PELP1 | SNV | Missense_Mutation | c.2155N>T | p.Gly719Cys | p.G719C | protein_coding | tolerated(0.1) | possibly_damaging(0.658) | TCGA-C8-A12M-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD | ||
PELP1 | SNV | Missense_Mutation | c.1364T>C | p.Val455Ala | p.V455A | protein_coding | tolerated(0.13) | probably_damaging(0.941) | TCGA-D8-A1XK-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Chemotherapy | doxorubicine+cyclophosphamide | SD | ||
PELP1 | insertion | In_Frame_Ins | novel | c.3496_3497insTCTGTTGCCCAGGCTGGAGTGCAGTGGCATGGTCTCAGCTCACTG | p.Pro1166delinsLeuCysCysProGlyTrpSerAlaValAlaTrpSerGlnLeuThrAla | p.P1166delinsLCCPGWSAVAWSQLTA | protein_coding | TCGA-A2-A0EM-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Hormone Therapy | tamoxiphen | SD | |||
PELP1 | insertion | Nonsense_Mutation | novel | c.1265_1266insGGCACAGCAGGAGGGGAGGTAGAAGAAG | p.Ile422MetfsTer8 | p.I422Mfs*8 | protein_coding | TCGA-AN-A041-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unknown | Unknown | SD |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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