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Gene: LINC01184 |
Gene summary for LINC01184 |
Gene summary. |
Gene information | Species | Human | Gene symbol | LINC01184 | Gene ID | 644873 |
Gene name | long intergenic non-protein coding RNA 1184 | |
Gene Alias | LINC01184 | |
Cytomap | 5q23.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
Identification of the aberrant gene expression in precancerous and cancerous lesions by comparing the gene expression of stem-like cells in diseased tissues with normal stem cells |
Malignant transformation involving gene list. |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
644873 | LINC01184 | P4T-E | Human | Esophagus | ESCC | 3.54e-14 | 2.18e-01 | 0.1323 |
644873 | LINC01184 | P5T-E | Human | Esophagus | ESCC | 2.10e-08 | 1.39e-01 | 0.1327 |
644873 | LINC01184 | P8T-E | Human | Esophagus | ESCC | 7.81e-10 | 1.56e-01 | 0.0889 |
644873 | LINC01184 | P9T-E | Human | Esophagus | ESCC | 1.06e-16 | 1.66e-01 | 0.1131 |
644873 | LINC01184 | P10T-E | Human | Esophagus | ESCC | 1.14e-26 | 4.88e-01 | 0.116 |
644873 | LINC01184 | P11T-E | Human | Esophagus | ESCC | 2.71e-03 | 1.22e-01 | 0.1426 |
644873 | LINC01184 | P12T-E | Human | Esophagus | ESCC | 3.19e-14 | 3.23e-01 | 0.1122 |
644873 | LINC01184 | P15T-E | Human | Esophagus | ESCC | 4.95e-18 | 3.45e-01 | 0.1149 |
644873 | LINC01184 | P16T-E | Human | Esophagus | ESCC | 1.34e-31 | 4.78e-01 | 0.1153 |
644873 | LINC01184 | P17T-E | Human | Esophagus | ESCC | 1.79e-12 | 3.46e-01 | 0.1278 |
644873 | LINC01184 | P19T-E | Human | Esophagus | ESCC | 5.03e-05 | 3.50e-01 | 0.1662 |
644873 | LINC01184 | P20T-E | Human | Esophagus | ESCC | 2.05e-29 | 6.50e-01 | 0.1124 |
644873 | LINC01184 | P21T-E | Human | Esophagus | ESCC | 1.13e-22 | 4.34e-01 | 0.1617 |
644873 | LINC01184 | P22T-E | Human | Esophagus | ESCC | 5.26e-30 | 4.39e-01 | 0.1236 |
644873 | LINC01184 | P23T-E | Human | Esophagus | ESCC | 1.07e-19 | 4.30e-01 | 0.108 |
644873 | LINC01184 | P24T-E | Human | Esophagus | ESCC | 8.53e-13 | 3.50e-01 | 0.1287 |
644873 | LINC01184 | P26T-E | Human | Esophagus | ESCC | 8.77e-13 | 2.85e-01 | 0.1276 |
644873 | LINC01184 | P27T-E | Human | Esophagus | ESCC | 1.42e-19 | 2.99e-01 | 0.1055 |
644873 | LINC01184 | P28T-E | Human | Esophagus | ESCC | 2.90e-10 | 1.79e-01 | 0.1149 |
644873 | LINC01184 | P30T-E | Human | Esophagus | ESCC | 9.36e-14 | 5.24e-01 | 0.137 |
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Transcriptomic changes along malignancy continuum. |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
Find out the enriched GO biological processes and KEGG pathways involved in transition from healthy to precancer to cancer |
Figure of enriched GO biological processes. |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | |
Colorectum | SER | |
Colorectum | MSS | |
Colorectum | MSI-H | |
Colorectum | FAP |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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Enriched GO biological processes. |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Enriched KEGG pathways. |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
Identification of potential cell-cell interactions between two cell types and their ligand-receptor pairs for different disease states |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
Find out the significant the regulons (TFs) and the target genes of each regulon across cell types for different disease states |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
Annotation of somatic variants for genes involved in malignant transformation |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
Identification of chemicals and drugs interact with genes involved in malignant transfromation |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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