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Gene: LINC00667 |
Gene summary for LINC00667 |
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Gene information | Species | Human | Gene symbol | LINC00667 | Gene ID | 339290 |
Gene name | long intergenic non-protein coding RNA 667 | |
Gene Alias | LINC00667 | |
Cytomap | 18p11.31 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
339290 | LINC00667 | P54T-E | Human | Esophagus | ESCC | 2.91e-41 | 1.05e+00 | 0.0975 |
339290 | LINC00667 | P56T-E | Human | Esophagus | ESCC | 3.42e-05 | 5.71e-01 | 0.1613 |
339290 | LINC00667 | P57T-E | Human | Esophagus | ESCC | 8.70e-17 | 3.20e-01 | 0.0926 |
339290 | LINC00667 | P61T-E | Human | Esophagus | ESCC | 6.18e-70 | 2.45e+00 | 0.099 |
339290 | LINC00667 | P62T-E | Human | Esophagus | ESCC | 2.43e-54 | 9.83e-01 | 0.1302 |
339290 | LINC00667 | P65T-E | Human | Esophagus | ESCC | 6.43e-19 | 3.53e-01 | 0.0978 |
339290 | LINC00667 | P74T-E | Human | Esophagus | ESCC | 3.81e-50 | 1.45e+00 | 0.1479 |
339290 | LINC00667 | P75T-E | Human | Esophagus | ESCC | 2.63e-43 | 7.79e-01 | 0.1125 |
339290 | LINC00667 | P76T-E | Human | Esophagus | ESCC | 1.02e-25 | 4.57e-01 | 0.1207 |
339290 | LINC00667 | P79T-E | Human | Esophagus | ESCC | 1.33e-26 | 4.42e-01 | 0.1154 |
339290 | LINC00667 | P80T-E | Human | Esophagus | ESCC | 2.75e-45 | 1.51e+00 | 0.155 |
339290 | LINC00667 | P82T-E | Human | Esophagus | ESCC | 2.14e-05 | 2.52e-01 | 0.1072 |
339290 | LINC00667 | P83T-E | Human | Esophagus | ESCC | 4.95e-15 | 5.01e-01 | 0.1738 |
339290 | LINC00667 | P84T-E | Human | Esophagus | ESCC | 1.89e-10 | 5.37e-01 | 0.0933 |
339290 | LINC00667 | P89T-E | Human | Esophagus | ESCC | 1.07e-02 | 2.07e-01 | 0.1752 |
339290 | LINC00667 | P91T-E | Human | Esophagus | ESCC | 3.45e-09 | 8.55e-01 | 0.1828 |
339290 | LINC00667 | P107T-E | Human | Esophagus | ESCC | 6.69e-28 | 6.26e-01 | 0.171 |
339290 | LINC00667 | P126T-E | Human | Esophagus | ESCC | 9.24e-08 | 6.40e-01 | 0.1125 |
339290 | LINC00667 | P127T-E | Human | Esophagus | ESCC | 1.20e-19 | 3.48e-01 | 0.0826 |
339290 | LINC00667 | P128T-E | Human | Esophagus | ESCC | 1.65e-13 | 4.84e-01 | 0.1241 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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