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Gene: LINC01139 |
Gene summary for LINC01139 |
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Gene information | Species | Human | Gene symbol | LINC01139 | Gene ID | 339535 |
Gene name | long intergenic non-protein coding RNA 1139 | |
Gene Alias | LINK-A | |
Cytomap | 1q43 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
339535 | LINC01139 | P76T-E | Human | Esophagus | ESCC | 1.59e-30 | 6.00e-01 | 0.1207 |
339535 | LINC01139 | P80T-E | Human | Esophagus | ESCC | 4.98e-02 | 1.05e-01 | 0.155 |
339535 | LINC01139 | P84T-E | Human | Esophagus | ESCC | 1.06e-03 | 2.42e-01 | 0.0933 |
339535 | LINC01139 | P89T-E | Human | Esophagus | ESCC | 6.19e-09 | 5.21e-01 | 0.1752 |
339535 | LINC01139 | P91T-E | Human | Esophagus | ESCC | 1.38e-03 | 2.77e-01 | 0.1828 |
339535 | LINC01139 | P107T-E | Human | Esophagus | ESCC | 2.64e-07 | 1.85e-01 | 0.171 |
339535 | LINC01139 | P126T-E | Human | Esophagus | ESCC | 8.75e-03 | 2.09e-01 | 0.1125 |
339535 | LINC01139 | P127T-E | Human | Esophagus | ESCC | 7.38e-03 | 9.11e-02 | 0.0826 |
339535 | LINC01139 | P130T-E | Human | Esophagus | ESCC | 7.90e-03 | 8.99e-02 | 0.1676 |
339535 | LINC01139 | C04 | Human | Oral cavity | OSCC | 9.22e-05 | 2.25e-01 | 0.2633 |
339535 | LINC01139 | C43 | Human | Oral cavity | OSCC | 5.65e-20 | 4.34e-01 | 0.1704 |
339535 | LINC01139 | C46 | Human | Oral cavity | OSCC | 4.55e-41 | 9.19e-01 | 0.1673 |
339535 | LINC01139 | C57 | Human | Oral cavity | OSCC | 7.16e-03 | 2.13e-01 | 0.1679 |
339535 | LINC01139 | C08 | Human | Oral cavity | OSCC | 9.89e-27 | 5.16e-01 | 0.1919 |
339535 | LINC01139 | LN46 | Human | Oral cavity | OSCC | 1.43e-23 | 7.45e-01 | 0.1666 |
339535 | LINC01139 | SYSMH2 | Human | Oral cavity | OSCC | 2.81e-04 | 1.63e-01 | 0.2326 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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