![]() |
|||||
|
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() | |
![]() |
Gene: LINC01138 |
Gene summary for LINC01138 |
![]() |
Gene information | Species | Human | Gene symbol | LINC01138 | Gene ID | 388685 |
Gene name | long intergenic non-protein coding RNA 1138 | |
Gene Alias | LINC00875 | |
Cytomap | 1q21.2 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
Top |
Malignant transformation analysis |
![]() |
![]() |
Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
388685 | LINC01138 | HTA11_6818_2000001021 | Human | Colorectum | AD | 1.33e-34 | 1.05e+00 | 0.0588 |
388685 | LINC01138 | HTA11_99999970781_79442 | Human | Colorectum | MSS | 2.07e-07 | 1.74e-01 | 0.294 |
388685 | LINC01138 | HTA11_99999965062_69753 | Human | Colorectum | MSI-H | 6.28e-10 | 6.32e-01 | 0.3487 |
388685 | LINC01138 | HTA11_99999965104_69814 | Human | Colorectum | MSS | 1.09e-06 | 2.46e-01 | 0.281 |
388685 | LINC01138 | HTA11_99999971662_82457 | Human | Colorectum | MSS | 9.32e-10 | 2.34e-01 | 0.3859 |
388685 | LINC01138 | HTA11_99999974143_84620 | Human | Colorectum | MSS | 7.82e-13 | 3.07e-01 | 0.3005 |
388685 | LINC01138 | HTA12-23-1 | Human | Pancreas | PDAC | 1.54e-02 | 5.81e-01 | 0.3405 |
388685 | LINC01138 | HTA12-25-1 | Human | Pancreas | PDAC | 4.02e-05 | 5.78e-01 | 0.313 |
388685 | LINC01138 | HTA12-26-1 | Human | Pancreas | PDAC | 2.98e-13 | 6.96e-01 | 0.3728 |
388685 | LINC01138 | HTA12-29-1 | Human | Pancreas | PDAC | 2.18e-34 | 7.23e-01 | 0.3722 |
Page: 1 2 |
![]() |
∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
Top |
Malignant transformation related pathway analysis |
![]() |
![]() |
Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
Page: 1 2 3 4 5 6 7 8 9 |
![]() |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
Page: 1 |
![]() |
Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
Page: 1 |
Top |
Cell-cell communication analysis |
![]() |
Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
Page: 1 |
Top |
Single-cell gene regulatory network inference analysis |
![]() |
TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
Page: 1 |
Top |
Somatic mutation of malignant transformation related genes |
![]() |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
Page: 1 |
Top |
Related drugs of malignant transformation related genes |
![]() |
(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
Page: 1 |