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Gene: LINC00909 |
Gene summary for LINC00909 |
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Gene information | Species | Human | Gene symbol | LINC00909 | Gene ID | 400657 |
Gene name | ZNF407 antisense RNA 1 | |
Gene Alias | LINC00909 | |
Cytomap | 18q22.3 | |
Gene Type | ncRNA | GO ID | NA | UniProtAcc | NA |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
400657 | LINC00909 | P27T-E | Human | Esophagus | ESCC | 9.35e-10 | 2.08e-01 | 0.1055 |
400657 | LINC00909 | P28T-E | Human | Esophagus | ESCC | 5.79e-16 | 2.72e-01 | 0.1149 |
400657 | LINC00909 | P30T-E | Human | Esophagus | ESCC | 8.34e-12 | 3.67e-01 | 0.137 |
400657 | LINC00909 | P31T-E | Human | Esophagus | ESCC | 1.88e-04 | 1.14e-01 | 0.1251 |
400657 | LINC00909 | P32T-E | Human | Esophagus | ESCC | 8.56e-12 | 2.38e-01 | 0.1666 |
400657 | LINC00909 | P36T-E | Human | Esophagus | ESCC | 5.48e-08 | 2.33e-01 | 0.1187 |
400657 | LINC00909 | P37T-E | Human | Esophagus | ESCC | 5.94e-11 | 2.24e-01 | 0.1371 |
400657 | LINC00909 | P39T-E | Human | Esophagus | ESCC | 1.88e-04 | 1.17e-01 | 0.0894 |
400657 | LINC00909 | P42T-E | Human | Esophagus | ESCC | 2.42e-06 | 1.64e-01 | 0.1175 |
400657 | LINC00909 | P47T-E | Human | Esophagus | ESCC | 1.66e-02 | 7.92e-02 | 0.1067 |
400657 | LINC00909 | P48T-E | Human | Esophagus | ESCC | 4.12e-11 | 2.15e-01 | 0.0959 |
400657 | LINC00909 | P52T-E | Human | Esophagus | ESCC | 4.12e-11 | 2.27e-01 | 0.1555 |
400657 | LINC00909 | P54T-E | Human | Esophagus | ESCC | 5.82e-06 | 1.44e-01 | 0.0975 |
400657 | LINC00909 | P56T-E | Human | Esophagus | ESCC | 1.16e-08 | 6.24e-01 | 0.1613 |
400657 | LINC00909 | P57T-E | Human | Esophagus | ESCC | 3.89e-12 | 2.30e-01 | 0.0926 |
400657 | LINC00909 | P61T-E | Human | Esophagus | ESCC | 1.56e-08 | 1.82e-01 | 0.099 |
400657 | LINC00909 | P62T-E | Human | Esophagus | ESCC | 7.83e-12 | 2.16e-01 | 0.1302 |
400657 | LINC00909 | P65T-E | Human | Esophagus | ESCC | 1.22e-06 | 1.37e-01 | 0.0978 |
400657 | LINC00909 | P74T-E | Human | Esophagus | ESCC | 2.13e-33 | 7.62e-01 | 0.1479 |
400657 | LINC00909 | P75T-E | Human | Esophagus | ESCC | 4.17e-05 | 1.05e-01 | 0.1125 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
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