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Gene: CLU |
Gene summary for CLU |
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Gene information | Species | Human | Gene symbol | CLU | Gene ID | 1191 |
Gene name | clusterin | |
Gene Alias | AAG4 | |
Cytomap | 8p21.1 | |
Gene Type | protein-coding | GO ID | GO:0000902 | UniProtAcc | P10909 |
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Malignant transformation analysis |
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Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
1191 | CLU | male-WTA | Human | Thyroid | PTC | 9.25e-95 | 7.45e-01 | 0.1037 |
1191 | CLU | female-WTA | Human | Thyroid | PTC | 5.82e-21 | 5.91e-01 | 0.0726 |
1191 | CLU | PTC01 | Human | Thyroid | PTC | 4.92e-52 | 4.58e+00 | 0.1899 |
1191 | CLU | PTC03 | Human | Thyroid | PTC | 1.53e-14 | 1.24e+00 | 0.1784 |
1191 | CLU | PTC04 | Human | Thyroid | PTC | 3.24e-18 | 3.18e+00 | 0.1927 |
1191 | CLU | PTC05 | Human | Thyroid | PTC | 3.10e-46 | 4.60e+00 | 0.2065 |
1191 | CLU | PTC06 | Human | Thyroid | PTC | 9.59e-54 | 5.02e+00 | 0.2057 |
1191 | CLU | PTC07 | Human | Thyroid | PTC | 2.51e-72 | 4.96e+00 | 0.2044 |
1191 | CLU | ATC08 | Human | Thyroid | ATC | 1.47e-16 | -1.09e+00 | 0.0541 |
1191 | CLU | ATC12 | Human | Thyroid | ATC | 1.64e-61 | -1.39e+00 | 0.34 |
1191 | CLU | ATC13 | Human | Thyroid | ATC | 3.84e-62 | -1.29e+00 | 0.34 |
1191 | CLU | ATC3 | Human | Thyroid | ATC | 4.80e-12 | -1.12e+00 | 0.338 |
1191 | CLU | ATC4 | Human | Thyroid | ATC | 7.20e-46 | -1.27e+00 | 0.34 |
1191 | CLU | ATC5 | Human | Thyroid | ATC | 1.27e-38 | -1.24e+00 | 0.34 |
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∗log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage. |
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Malignant transformation related pathway analysis |
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Tissue | Disease Stage | Enriched GO biological Processes |
Colorectum | AD | ![]() |
Colorectum | SER | ![]() |
Colorectum | MSS | ![]() |
Colorectum | MSI-H | ![]() |
Colorectum | FAP | ![]() |
∗Top 15 enriched GO BP terms are showed in the bar plot of each disease state in each tissue. Each row represents a significant GO biological process which is colored according to the -log10(p.adjust). |
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GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:200123314 | Breast | IDC | regulation of apoptotic signaling pathway | 82/1434 | 356/18723 | 6.27e-20 | 5.93e-17 | 82 |
GO:009719314 | Breast | IDC | intrinsic apoptotic signaling pathway | 69/1434 | 288/18723 | 6.32e-18 | 2.99e-15 | 69 |
GO:200124214 | Breast | IDC | regulation of intrinsic apoptotic signaling pathway | 47/1434 | 164/18723 | 8.25e-16 | 2.93e-13 | 47 |
GO:200123414 | Breast | IDC | negative regulation of apoptotic signaling pathway | 49/1434 | 224/18723 | 1.45e-11 | 2.58e-09 | 49 |
GO:000645713 | Breast | IDC | protein folding | 47/1434 | 212/18723 | 2.31e-11 | 3.86e-09 | 47 |
GO:004586214 | Breast | IDC | positive regulation of proteolysis | 66/1434 | 372/18723 | 9.76e-11 | 1.29e-08 | 66 |
GO:200124314 | Breast | IDC | negative regulation of intrinsic apoptotic signaling pathway | 27/1434 | 98/18723 | 2.91e-09 | 2.50e-07 | 27 |
GO:001049814 | Breast | IDC | proteasomal protein catabolic process | 75/1434 | 490/18723 | 5.59e-09 | 4.41e-07 | 75 |
GO:004217614 | Breast | IDC | regulation of protein catabolic process | 63/1434 | 391/18723 | 1.32e-08 | 9.61e-07 | 63 |
GO:006107713 | Breast | IDC | chaperone-mediated protein folding | 21/1434 | 67/18723 | 1.35e-08 | 9.71e-07 | 21 |
GO:003425014 | Breast | IDC | positive regulation of cellular amide metabolic process | 35/1434 | 162/18723 | 1.63e-08 | 1.16e-06 | 35 |
GO:000863713 | Breast | IDC | apoptotic mitochondrial changes | 27/1434 | 107/18723 | 2.29e-08 | 1.57e-06 | 27 |
GO:190336214 | Breast | IDC | regulation of cellular protein catabolic process | 46/1434 | 255/18723 | 4.00e-08 | 2.68e-06 | 46 |
GO:190305014 | Breast | IDC | regulation of proteolysis involved in cellular protein catabolic process | 41/1434 | 221/18723 | 9.77e-08 | 5.84e-06 | 41 |
GO:003164714 | Breast | IDC | regulation of protein stability | 50/1434 | 298/18723 | 1.14e-07 | 6.57e-06 | 50 |
GO:007099714 | Breast | IDC | neuron death | 57/1434 | 361/18723 | 1.31e-07 | 7.38e-06 | 57 |
GO:003596614 | Breast | IDC | response to topologically incorrect protein | 32/1434 | 159/18723 | 3.71e-07 | 1.85e-05 | 32 |
GO:003497614 | Breast | IDC | response to endoplasmic reticulum stress | 43/1434 | 256/18723 | 8.42e-07 | 3.82e-05 | 43 |
GO:005082114 | Breast | IDC | protein stabilization | 35/1434 | 191/18723 | 1.12e-06 | 5.04e-05 | 35 |
GO:000183613 | Breast | IDC | release of cytochrome c from mitochondria | 17/1434 | 59/18723 | 1.23e-06 | 5.44e-05 | 17 |
Page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 |
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Pathway ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | qvalue | Count |
hsa04610 | Liver | NAFLD | Complement and coagulation cascades | 35/1043 | 86/8465 | 2.48e-11 | 2.04e-09 | 1.64e-09 | 35 |
hsa046101 | Liver | NAFLD | Complement and coagulation cascades | 35/1043 | 86/8465 | 2.48e-11 | 2.04e-09 | 1.64e-09 | 35 |
hsa046102 | Liver | Cirrhotic | Complement and coagulation cascades | 48/2530 | 86/8465 | 4.41e-07 | 5.44e-06 | 3.35e-06 | 48 |
hsa046103 | Liver | Cirrhotic | Complement and coagulation cascades | 48/2530 | 86/8465 | 4.41e-07 | 5.44e-06 | 3.35e-06 | 48 |
hsa046104 | Liver | HCC | Complement and coagulation cascades | 57/4020 | 86/8465 | 3.19e-04 | 1.45e-03 | 8.04e-04 | 57 |
hsa046105 | Liver | HCC | Complement and coagulation cascades | 57/4020 | 86/8465 | 3.19e-04 | 1.45e-03 | 8.04e-04 | 57 |
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Cell-cell communication analysis |
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Ligand | Receptor | LRpair | Pathway | Tissue | Disease Stage |
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Single-cell gene regulatory network inference analysis |
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TF | Cell Type | Tissue | Disease Stage | Target Gene | RSS | Regulon Activity |
∗The dot plots of a searched regulon are shown for all cell subpopulations in each disease state of each tissue based on the regulon specific score inferred using pySCENIC and by calculating the average expression. |
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Somatic mutation of malignant transformation related genes |
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Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
CLU | SNV | Missense_Mutation | novel | c.1199C>T | p.Ser400Phe | p.S400F | P10909 | protein_coding | deleterious(0) | possibly_damaging(0.708) | TCGA-3C-AALI-01 | Breast | breast invasive carcinoma | Female | <65 | I/II | Unspecific | Poly E | Complete Response |
CLU | SNV | Missense_Mutation | novel | c.862N>G | p.Ile288Val | p.I288V | P10909 | protein_coding | deleterious(0.04) | possibly_damaging(0.524) | TCGA-D8-A1JF-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD |
CLU | SNV | Missense_Mutation | novel | c.58N>T | p.Val20Phe | p.V20F | P10909 | protein_coding | deleterious(0.01) | probably_damaging(0.991) | TCGA-V7-A7HQ-01 | Breast | breast invasive carcinoma | Female | >=65 | III/IV | Hormone Therapy | letrozole | CR |
CLU | SNV | Missense_Mutation | c.139N>A | p.Gln47Lys | p.Q47K | P10909 | protein_coding | tolerated(0.31) | benign(0.005) | TCGA-AA-3510-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
CLU | SNV | Missense_Mutation | c.1027N>A | p.Glu343Lys | p.E343K | P10909 | protein_coding | tolerated(0.23) | possibly_damaging(0.503) | TCGA-AA-3672-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | SD | |
CLU | SNV | Missense_Mutation | rs769830551 | c.679C>T | p.Arg227Cys | p.R227C | P10909 | protein_coding | deleterious(0) | probably_damaging(1) | TCGA-AA-A01K-01 | Colorectum | colon adenocarcinoma | Female | >=65 | III/IV | Chemotherapy | folinic | CR |
CLU | SNV | Missense_Mutation | rs146625005 | c.1135N>A | p.Glu379Lys | p.E379K | P10909 | protein_coding | tolerated(0.5) | benign(0.195) | TCGA-AA-A01R-01 | Colorectum | colon adenocarcinoma | Male | <65 | III/IV | Chemotherapy | 5-fluorouracil | PD |
CLU | SNV | Missense_Mutation | c.236N>T | p.Lys79Met | p.K79M | P10909 | protein_coding | tolerated(0.08) | probably_damaging(0.995) | TCGA-AA-A02O-01 | Colorectum | colon adenocarcinoma | Male | >=65 | I/II | Unknown | Unknown | SD | |
CLU | SNV | Missense_Mutation | novel | c.98N>G | p.Glu33Gly | p.E33G | P10909 | protein_coding | deleterious(0) | probably_damaging(0.949) | TCGA-AZ-4315-01 | Colorectum | colon adenocarcinoma | Male | <65 | I/II | Unknown | Unknown | SD |
CLU | SNV | Missense_Mutation | c.657N>G | p.Phe219Leu | p.F219L | P10909 | protein_coding | tolerated(0.77) | benign(0.015) | TCGA-CK-4951-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
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Related drugs of malignant transformation related genes |
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(DGIdb 4.0) |
Entrez ID | Symbol | Category | Interaction Types | Drug Claim Name | Drug Name | PMIDs |
1191 | CLU | CELL SURFACE, DRUGGABLE GENOME | OGX-011 | CUSTIRSEN SODIUM | ||
1191 | CLU | CELL SURFACE, DRUGGABLE GENOME | antisense oligonucleotide | CUSTIRSEN | CUSTIRSEN | |
1191 | CLU | CELL SURFACE, DRUGGABLE GENOME | PMSG | 1547735 | ||
1191 | CLU | CELL SURFACE, DRUGGABLE GENOME | inhibitor | OGX-011 | CUSTIRSEN SODIUM | |
1191 | CLU | CELL SURFACE, DRUGGABLE GENOME | LUBIPROSTONE | LUBIPROSTONE |
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