Entrez ID | Symbol | Replicates | Species | Organ | Tissue | Adj P-value | Log2FC | Malignancy |
2810 | SFN | GSM5252127_BPH283PrSF_Via | Human | Prostate | BPH | 1.38e-13 | 4.53e-01 | -0.1453 |
2810 | SFN | GSM5252128_BPH327PrGF_Via | Human | Prostate | BPH | 3.80e-10 | 8.47e-01 | -0.1688 |
2810 | SFN | GSM5252129_BPH327PrSF_Via | Human | Prostate | BPH | 1.94e-02 | -1.40e-03 | -0.1697 |
2810 | SFN | GSM5252130_BPH340PrGF_Via | Human | Prostate | BPH | 1.67e-29 | 2.68e+00 | -0.1972 |
2810 | SFN | GSM5252131_BPH340PrSF_Via | Human | Prostate | BPH | 2.07e-19 | 1.75e+00 | -0.2126 |
2810 | SFN | GSM5252132_BPH389PrGF | Human | Prostate | BPH | 5.15e-17 | 2.16e+00 | -0.2247 |
2810 | SFN | GSM5252133_BPH389PrSF | Human | Prostate | BPH | 2.37e-16 | 1.25e+00 | -0.2027 |
2810 | SFN | GSM5252134_BPH511PrG_Fcol_3GEX | Human | Prostate | BPH | 5.30e-16 | 1.48e+00 | -0.1433 |
2810 | SFN | GSM5252135_BPH511PrPUr_Fcol_3GEX | Human | Prostate | BPH | 9.87e-13 | 1.99e+00 | -0.1833 |
2810 | SFN | GSM5252136_BPH556PrGA1_Fcol | Human | Prostate | BPH | 3.78e-06 | 8.28e-01 | -0.23 |
2810 | SFN | GSM5252137_BPH556PrGA2_Fcol | Human | Prostate | BPH | 7.14e-15 | 1.88e+00 | -0.23 |
2810 | SFN | 047563_1562-all-cells | Human | Prostate | BPH | 4.20e-39 | -8.48e-01 | 0.0791 |
2810 | SFN | 048752_1579-all-cells | Human | Prostate | BPH | 4.86e-45 | -7.58e-01 | 0.1008 |
2810 | SFN | 052095_1628-all-cells | Human | Prostate | BPH | 1.39e-40 | -8.75e-01 | 0.1032 |
2810 | SFN | 052097_1595-all-cells | Human | Prostate | BPH | 2.20e-45 | -7.95e-01 | 0.0972 |
2810 | SFN | 052099_1652-all-cells | Human | Prostate | BPH | 1.33e-64 | -1.03e+00 | 0.1038 |
2810 | SFN | Dong_P1 | Human | Prostate | Tumor | 9.93e-79 | -9.38e-01 | 0.035 |
2810 | SFN | Dong_P3 | Human | Prostate | Tumor | 9.95e-42 | -6.59e-01 | 0.0278 |
2810 | SFN | Dong_P4 | Human | Prostate | Tumor | 2.31e-13 | -6.89e-01 | 0.0292 |
2810 | SFN | Dong_P5 | Human | Prostate | Tumor | 9.94e-39 | -6.10e-01 | 0.053 |
Tissue | Expression Dynamics | Abbreviation |
Breast | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Breast/SFN_pca_on_diff_genes.png) | IDC: Invasive ductal carcinoma |
DCIS: Ductal carcinoma in situ |
Precancer(BRCA1-mut): Precancerous lesion from BRCA1 mutation carriers |
Cervix | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Cervix/SFN_pca_on_diff_genes.png) | CC: Cervix cancer |
HSIL_HPV: HPV-infected high-grade squamous intraepithelial lesions |
N_HPV: HPV-infected normal cervix |
Colorectum (GSE201348) | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Colorectum/Becker/SFN_pca_on_diff_genes.png) | FAP: Familial adenomatous polyposis |
CRC: Colorectal cancer |
Colorectum (HTA11) | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Colorectum/Chen/SFN_pca_on_diff_genes.png) | AD: Adenomas |
SER: Sessile serrated lesions |
MSI-H: Microsatellite-high colorectal cancer |
MSS: Microsatellite stable colorectal cancer |
Esophagus | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Esophagus/SFN_pca_on_diff_genes.png) | ESCC: Esophageal squamous cell carcinoma |
HGIN: High-grade intraepithelial neoplasias |
LGIN: Low-grade intraepithelial neoplasias |
GC | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/GC/SFN_pca_on_diff_genes.png) | CAG: Chronic atrophic gastritis |
CAG with IM: Chronic atrophic gastritis with intestinal metaplasia |
CSG: Chronic superficial gastritis |
GC: Gastric cancer |
SIM: Severe intestinal metaplasia |
WIM: Wild intestinal metaplasia |
Liver | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Liver/SFN_pca_on_diff_genes.png) | HCC: Hepatocellular carcinoma |
NAFLD: Non-alcoholic fatty liver disease |
Lung | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Lung/SFN_pca_on_diff_genes.png) | AAH: Atypical adenomatous hyperplasia |
AIS: Adenocarcinoma in situ |
IAC: Invasive lung adenocarcinoma |
MIA: Minimally invasive adenocarcinoma |
Oral Cavity | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/OralCavity/SFN_pca_on_diff_genes.png) | EOLP: Erosive Oral lichen planus |
LP: leukoplakia |
NEOLP: Non-erosive oral lichen planus |
OSCC: Oral squamous cell carcinoma |
Prostate | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Prostate/SFN_pca_on_diff_genes.png) | BPH: Benign Prostatic Hyperplasia |
Skin | ![The image shows the transcriptomic changes along malignancy continuum.log2FC in expression of this searched gene in stem-like cells from each diseased tissue sample relative to stem-like cells in normal samples in each tissue plotted against the malignancy continuum. Samples are colored based on if they are from different disease stage.](images/deg_images/Skin/SFN_pca_on_diff_genes.png) | AK: Actinic keratosis |
cSCC: Cutaneous squamous cell carcinoma |
SCCIS:squamous cell carcinoma in situ |
GO ID | Tissue | Disease Stage | Description | Gene Ratio | Bg Ratio | pvalue | p.adjust | Count |
GO:00971939 | Breast | Precancer | intrinsic apoptotic signaling pathway | 59/1080 | 288/18723 | 8.07e-18 | 3.60e-15 | 59 |
GO:00525479 | Breast | Precancer | regulation of peptidase activity | 71/1080 | 461/18723 | 2.72e-14 | 6.94e-12 | 71 |
GO:00525489 | Breast | Precancer | regulation of endopeptidase activity | 67/1080 | 432/18723 | 1.06e-13 | 2.36e-11 | 67 |
GO:20001169 | Breast | Precancer | regulation of cysteine-type endopeptidase activity | 43/1080 | 235/18723 | 1.30e-11 | 1.83e-09 | 43 |
GO:00432819 | Breast | Precancer | regulation of cysteine-type endopeptidase activity involved in apoptotic process | 40/1080 | 209/18723 | 1.59e-11 | 2.07e-09 | 40 |
GO:00458619 | Breast | Precancer | negative regulation of proteolysis | 50/1080 | 351/18723 | 2.99e-09 | 2.39e-07 | 50 |
GO:00086378 | Breast | Precancer | apoptotic mitochondrial changes | 23/1080 | 107/18723 | 3.44e-08 | 2.12e-06 | 23 |
GO:00513468 | Breast | Precancer | negative regulation of hydrolase activity | 50/1080 | 379/18723 | 3.85e-08 | 2.34e-06 | 50 |
GO:00104668 | Breast | Precancer | negative regulation of peptidase activity | 38/1080 | 262/18723 | 1.46e-07 | 7.82e-06 | 38 |
GO:00109519 | Breast | Precancer | negative regulation of endopeptidase activity | 37/1080 | 252/18723 | 1.55e-07 | 8.05e-06 | 37 |
GO:20001179 | Breast | Precancer | negative regulation of cysteine-type endopeptidase activity | 19/1080 | 86/18723 | 3.36e-07 | 1.58e-05 | 19 |
GO:00431548 | Breast | Precancer | negative regulation of cysteine-type endopeptidase activity involved in apoptotic process | 17/1080 | 78/18723 | 1.69e-06 | 6.08e-05 | 17 |
GO:00018367 | Breast | Precancer | release of cytochrome c from mitochondria | 14/1080 | 59/18723 | 4.80e-06 | 1.47e-04 | 14 |
GO:00506736 | Breast | Precancer | epithelial cell proliferation | 46/1080 | 437/18723 | 6.02e-05 | 1.23e-03 | 46 |
GO:19049519 | Breast | Precancer | positive regulation of establishment of protein localization | 36/1080 | 319/18723 | 9.30e-05 | 1.75e-03 | 36 |
GO:00086308 | Breast | Precancer | intrinsic apoptotic signaling pathway in response to DNA damage | 16/1080 | 99/18723 | 1.65e-04 | 2.74e-03 | 16 |
GO:00508789 | Breast | Precancer | regulation of body fluid levels | 40/1080 | 379/18723 | 1.68e-04 | 2.77e-03 | 40 |
GO:00506786 | Breast | Precancer | regulation of epithelial cell proliferation | 40/1080 | 381/18723 | 1.88e-04 | 3.03e-03 | 40 |
GO:00085445 | Breast | Precancer | epidermis development | 35/1080 | 324/18723 | 2.71e-04 | 3.96e-03 | 35 |
GO:00160497 | Breast | Precancer | cell growth | 46/1080 | 482/18723 | 5.63e-04 | 7.16e-03 | 46 |
Hugo Symbol | Variant Class | Variant Classification | dbSNP RS | HGVSc | HGVSp | HGVSp Short | SWISSPROT | BIOTYPE | SIFT | PolyPhen | Tumor Sample Barcode | Tissue | Histology | Sex | Age | Stage | Therapy Types | Drugs | Outcome |
SFN | SNV | Missense_Mutation | | c.369G>T | p.Met123Ile | p.M123I | P31947 | protein_coding | deleterious_low_confidence(0) | probably_damaging(1) | TCGA-AC-A23H-01 | Breast | breast invasive carcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
SFN | SNV | Missense_Mutation | rs753008567 | c.721N>A | p.Glu241Lys | p.E241K | P31947 | protein_coding | deleterious_low_confidence(0.03) | benign(0.369) | TCGA-C5-A1MK-01 | Cervix | cervical & endocervical cancer | Female | >=65 | III/IV | Chemotherapy | carboplatin | PD |
SFN | SNV | Missense_Mutation | novel | c.177G>C | p.Trp59Cys | p.W59C | P31947 | protein_coding | deleterious_low_confidence(0) | probably_damaging(1) | TCGA-VS-A953-01 | Cervix | cervical & endocervical cancer | Female | <65 | I/II | Unknown | Unknown | PD |
SFN | SNV | Missense_Mutation | | c.515T>A | p.Leu172Gln | p.L172Q | P31947 | protein_coding | deleterious_low_confidence(0) | probably_damaging(0.999) | TCGA-A6-5665-01 | Colorectum | colon adenocarcinoma | Female | >=65 | I/II | Unknown | Unknown | PD |
SFN | SNV | Missense_Mutation | rs532069878 | c.289N>A | p.Asp97Asn | p.D97N | P31947 | protein_coding | tolerated_low_confidence(1) | benign(0) | TCGA-AG-4021-01 | Colorectum | rectum adenocarcinoma | Female | >=65 | III/IV | Unknown | Unknown | PD |
SFN | SNV | Missense_Mutation | novel | c.47C>T | p.Ala16Val | p.A16V | P31947 | protein_coding | deleterious_low_confidence(0.02) | possibly_damaging(0.899) | TCGA-AJ-A3EK-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | <65 | I/II | Chemotherapy | carboplatin | CR |
SFN | deletion | In_Frame_Del | novel | c.110_112delCCT | p.Ser37del | p.S37del | P31947 | protein_coding | | | TCGA-AJ-A3BH-01 | Endometrium | uterine corpus endometrioid carcinoma | Female | Unknown | I/II | Unknown | Unknown | SD |
SFN | SNV | Missense_Mutation | | c.610N>A | p.Asp204Asn | p.D204N | P31947 | protein_coding | deleterious_low_confidence(0) | benign(0.044) | TCGA-21-5782-01 | Lung | lung squamous cell carcinoma | Female | >=65 | I/II | Unknown | Unknown | SD |
SFN | SNV | Missense_Mutation | | c.147G>C | p.Lys49Asn | p.K49N | P31947 | protein_coding | deleterious_low_confidence(0) | probably_damaging(1) | TCGA-60-2698-01 | Lung | lung squamous cell carcinoma | Male | <65 | I/II | Chemotherapy | mithramycin | PD |
SFN | SNV | Missense_Mutation | novel | c.79A>G | p.Lys27Glu | p.K27E | P31947 | protein_coding | tolerated_low_confidence(0.14) | benign(0.027) | TCGA-BA-4077-01 | Oral cavity | head & neck squamous cell carcinoma | Female | <65 | I/II | Chemotherapy | cetuximab | PD |