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Literature curation for genes related to the immune escape mechanisms
Comparsion of the gene expression between the tumor and normal group in TCGA
Comparsion of the gene methylation in promoter regions between the tumor and normal group in TCGA
Comparsion of the gene methylation in genebody regions between the tumor and normal group in TCGA
Summary of the copy number variation across cancer types in TCGA
Differentially expressed genes between mutated and wild type group
Up and down regulated pathways between mutated and wild type group
Comparsion of the gene expression between the non-responders and responders after immunotherapy
Comparsion of the mutation rate between the non-responders and responders after immunotherapy
Spearman correlation between the abundence of TIL and gene expression level
Spearman correlation between the abundence of TIL and copy number
Spearman correlation between the abundence of TIL and methylation level in promoter regions
Spearman correlation between the abundence of TIL and methylation level in genebody regions
The immune subtypes, escaped(-/+), microsatellite instability status and dN/dS of TCGA samples.
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