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Fusion gene ID: 9487 |
FusionGeneSummary for DCX_PASD1 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: DCX_PASD1 | Fusion gene ID: 9487 | Hgene | Tgene | Gene symbol | DCX | PASD1 | Gene ID | 1641 | 139135 |
| Gene name | doublecortin | PAS domain containing repressor 1 | |
| Synonyms | DBCN|DC|LISX|SCLH|XLIS | CT63|CT64|OXTES1 | |
| Cytomap | Xq23 | Xq28 | |
| Type of gene | protein-coding | protein-coding | |
| Description | neuronal migration protein doublecortindoublecortexdoublinlis-Xlissencephalin-X | circadian clock protein PASD1PAS domain containing 1cancer/testis antigen 63 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | O43602 | Q8IV76 | |
| Ensembl transtripts involved in fusion gene | ENST00000371993, ENST00000356915, ENST00000338081, ENST00000356220, ENST00000488120, ENST00000496551, | ENST00000370357, | |
| Fusion gene scores | * DoF score | 1 X 2 X 1=2 | 3 X 2 X 3=18 |
| # samples | 1 | 3 | |
| ** MAII score | log2(1/2*10)=2.32192809488736 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: DCX [Title/Abstract] AND PASD1 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | DCX | GO:0001764 | neuron migration | 14741102 |
| Tgene | PASD1 | GO:0042754 | negative regulation of circadian rhythm | 25936801 |
| Tgene | PASD1 | GO:0045892 | negative regulation of transcription, DNA-templated | 25936801 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | KIRC | TCGA-CJ-5681-01A | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| TCGA | LD | KIRC | TCGA-CJ-5681-01A | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000371993 | ENST00000370357 | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000356915 | ENST00000370357 | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| Frame-shit | ENST00000338081 | ENST00000370357 | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000356220 | ENST00000370357 | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| In-frame | ENST00000488120 | ENST00000370357 | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000496551 | ENST00000370357 | DCX | chrX | 110574147 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000371993 | ENST00000370357 | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
| In-frame | ENST00000356915 | ENST00000370357 | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000338081 | ENST00000370357 | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
| Frame-shit | ENST00000356220 | ENST00000370357 | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000488120 | ENST00000370357 | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
| intron-3CDS | ENST00000496551 | ENST00000370357 | DCX | chrX | 110574132 | - | PASD1 | chrX | 150828185 | + |
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FusionProtFeatures for DCX_PASD1 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| DCX | PASD1 |
| Microtubule-associated protein required for initialsteps of neuronal dispersion and cortex lamination during cerebralcortex development. May act by competing with the putativeneuronal protein kinase DCLK1 in binding to a target protein. Mayin that way participate in a signaling pathway that is crucial forneuronal interaction before and during migration, possibly as partof a calcium ion-dependent signal transduction pathway. May bepart with PAFAH1B1/LIS-1 of overlapping, but distinct, signalingpathways that promote neuronal migration.{ECO:0000269|PubMed:22359282}. | Functions as a suppressor of the biological clock thatdrives the daily circadian rhythms of cells throughout the body(PubMed:25936801). Acts as a nuclear repressor of the CLOCK-ARNTL/BMAL1 heterodimer-mediated transcriptional activation of thecore clock components (PubMed:25936801). Inhibits circadian clockfunction in cancer cells, when overexpressed (PubMed:25936801).{ECO:0000269|PubMed:25936801}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000338081 | - | 5 | 7 | 287_365 | 391 | 442 | Compositional bias | Note=Pro/Ser-rich |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000338081 | - | 5 | 7 | 180_263 | 391 | 442 | Domain | Doublecortin 2 |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000338081 | - | 5 | 7 | 53_139 | 391 | 442 | Domain | Doublecortin 1 |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000371993 | - | 5 | 7 | 180_263 | 310 | 361 | Domain | Doublecortin 2 |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000371993 | - | 5 | 7 | 53_139 | 310 | 361 | Domain | Doublecortin 1 |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000488120 | - | 5 | 7 | 180_263 | 310 | 361 | Domain | Doublecortin 2 |
| Hgene | DCX | chrX:110574147 | chrX:150828185 | ENST00000488120 | - | 5 | 7 | 53_139 | 310 | 361 | Domain | Doublecortin 1 |
| Tgene | >PASD1 | chrX:110574147 | chrX:150828185 | ENST00000370357 | + | 8 | 16 | 365_412 | 239 | 774 | Coiled coil | Ontology_term=ECO:0000255 |
| Tgene | >PASD1 | chrX:110574147 | chrX:150828185 | ENST00000370357 | + | 8 | 16 | 475_553 | 239 | 774 | Coiled coil | Ontology_term=ECO:0000255 |
| Tgene | >PASD1 | chrX:110574147 | chrX:150828185 | ENST00000370357 | + | 8 | 16 | 508_548 | 239 | 774 | Compositional bias | Note=Lys-rich |
| Tgene | >PASD1 | chrX:110574147 | chrX:150828185 | ENST00000370357 | + | 8 | 16 | 665_668 | 239 | 774 | Compositional bias | Note=Poly-Ser |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000356220 | - | 1 | 8 | 287_365 | -34 | 366 | Compositional bias | Note=Pro/Ser-rich |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000356915 | - | 1 | 7 | 287_365 | -21 | 366 | Compositional bias | Note=Pro/Ser-rich |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000371993 | - | 5 | 7 | 287_365 | 310 | 361 | Compositional bias | Note=Pro/Ser-rich |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000488120 | - | 5 | 7 | 287_365 | 310 | 361 | Compositional bias | Note=Pro/Ser-rich |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000356220 | - | 1 | 8 | 180_263 | -34 | 366 | Domain | Doublecortin 2 |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000356220 | - | 1 | 8 | 53_139 | -34 | 366 | Domain | Doublecortin 1 |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000356915 | - | 1 | 7 | 180_263 | -21 | 366 | Domain | Doublecortin 2 |
| Hgene | >DCX | chrX:110574147 | chrX:150828185 | ENST00000356915 | - | 1 | 7 | 53_139 | -21 | 366 | Domain | Doublecortin 1 |
| Tgene | PASD1 | chrX:110574147 | chrX:150828185 | ENST00000370357 | + | 8 | 16 | 229_236 | 239 | 774 | Compositional bias | Note=Poly-Ala |
| Tgene | PASD1 | chrX:110574147 | chrX:150828185 | ENST00000370357 | + | 8 | 16 | 30_102 | 239 | 774 | Domain | PAS |
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FusionGeneSequence for DCX_PASD1 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_DCX_ENST00000371993_chrX_110574147_-_PASD1_ENST00000370357_chrX_150828185_+_845aa MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRS LSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESTVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRTAQDDFSLDENE CRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSGPN_TCRG_AVWTTRKRSHVCRF_FNLLLQYSFPGYTA_ISSLILARLSR _A_GESIVQGRPSGPGVLGGSGGLSGPGGPNGPAGPREPSCPVGPGRPDGSSGSRGLSGPGGCWRKCSAITAIITSCI_HH_PGTGTDEE VEGAARREDLVAA_CHPKPAECIGIDDGSPSEAAKHITPRCHS_SPIFGGSAQETTETTRWASEAASPTSQGRQVFLWFIFIQLSQKHWG ASGALCCLQPAATGAARTTPEGAAAAAAGAAATAERAKEGAEAEEDAGEEEAAGAENAGEEEAAGAEAAKEEEATGAEEVAGADATERAR GGAAEAAAARAATEA_CHRGE_EGADMPAKPT_RICAPLQSPC_IFTGPTHCSCPESS_TTALWLLSR_KLWATGR_ESKFLS_GVSRAP REPAAIDRYLKL_GNFFFQHSSVSHNFRLNHKHPGDPTGLHPALARVV_FTRSCCPSEHLVLR_AGHPARPTHLPSGASF_GRSRGTS_S >In-frame_DCX_ENST00000488120_chrX_110574147_-_PASD1_ENST00000370357_chrX_150828185_+_845aa MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRS LSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESTVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRTAQDDFSLDENE CRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSGPN_TCRG_AVWTTRKRSHVCRF_FNLLLQYSFPGYTA_ISSLILARLSR _A_GESIVQGRPSGPGVLGGSGGLSGPGGPNGPAGPREPSCPVGPGRPDGSSGSRGLSGPGGCWRKCSAITAIITSCI_HH_PGTGTDEE VEGAARREDLVAA_CHPKPAECIGIDDGSPSEAAKHITPRCHS_SPIFGGSAQETTETTRWASEAASPTSQGRQVFLWFIFIQLSQKHWG ASGALCCLQPAATGAARTTPEGAAAAAAGAAATAERAKEGAEAEEDAGEEEAAGAENAGEEEAAGAEAAKEEEATGAEEVAGADATERAR GGAAEAAAARAATEA_CHRGE_EGADMPAKPT_RICAPLQSPC_IFTGPTHCSCPESS_TTALWLLSR_KLWATGR_ESKFLS_GVSRAP REPAAIDRYLKL_GNFFFQHSSVSHNFRLNHKHPGDPTGLHPALARVV_FTRSCCPSEHLVLR_AGHPARPTHLPSGASF_GRSRGTS_S >In-frame_DCX_ENST00000356915_chrX_110574132_-_PASD1_ENST00000370357_chrX_150828185_+_850aa MELDFGHFDERDKTSRNMRGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFRSFDALLADLTRS LSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESTVCSSDNFFKKVEYTKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPK LVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFRTAQDDFSLDENE CRVMKGNPSATAGPKASPTPQKTSAKSPGPMRRSKSPADSGNDQDGPN_TCRG_AVWTTRKRSHVCRF_FNLLLQYSFPGYTA_ISSLIL ARLSR_A_GESIVQGRPSGPGVLGGSGGLSGPGGPNGPAGPREPSCPVGPGRPDGSSGSRGLSGPGGCWRKCSAITAIITSCI_HH_PGT GTDEEVEGAARREDLVAA_CHPKPAECIGIDDGSPSEAAKHITPRCHS_SPIFGGSAQETTETTRWASEAASPTSQGRQVFLWFIFIQLS QKHWGASGALCCLQPAATGAARTTPEGAAAAAAGAAATAERAKEGAEAEEDAGEEEAAGAENAGEEEAAGAEAAKEEEATGAEEVAGADA TERARGGAAEAAAARAATEA_CHRGE_EGADMPAKPT_RICAPLQSPC_IFTGPTHCSCPESS_TTALWLLSR_KLWATGR_ESKFLS_G VSRAPREPAAIDRYLKL_GNFFFQHSSVSHNFRLNHKHPGDPTGLHPALARVV_FTRSCCPSEHLVLR_AGHPARPTHLPSGASF_GRSR |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_DCX_ENST00000371993_chrX_110574147_-_PASD1_ENST00000370357_chrX_150828185_+_2536nt ATGGAACTTGATTTTGGACACTTTGACGAAAGAGATAAGACATCCAGGAACATGCGAGGCTCCCGGATGAATGGGTTGCCTAGCCCCACT CACAGCGCCCACTGTAGCTTCTACCGAACCAGAACCTTGCAGGCACTGAGTAATGAGAAGAAAGCCAAGAAGGTACGTTTCTACCGCAAT GGGGACCGCTACTTCAAGGGGATTGTGTACGCTGTGTCCTCTGACCGTTTTCGCAGCTTTGACGCCTTGCTGGCTGACCTGACGCGATCT CTGTCTGACAACATCAACCTGCCTCAGGGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAGATCGGAAGCATGGATGAACTGGAG GAAGGGGAAAGCTATGTCTGTTCCTCAGACAACTTCTTTAAAAAGGTGGAGTACACCAAGAATGTCAATCCCAACTGGTCTGTCAACGTA AAAACATCTGCCAATATGAAAGCCCCCCAGTCCTTGGCTAGCAGCAACAGTGCACAGGCCAGGGAGAACAAGGACTTTGTGCGCCCCAAG CTGGTTACCATCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTGTGCTTCTGAACAAGAAGACAGCCCACTCTTTTGAGCAAGTC CTCACTGATATCACAGAAGCCATCAAACTGGAGACCGGGGTTGTCAAAAAACTCTACACTCTGGATGGAAAACAGGTAACTTGTCTCCAT GATTTCTTTGGTGATGATGATGTGTTTATTGCCTGTGGTCCTGAAAAATTTCGCTATGCTCAGGATGATTTTTCTCTGGATGAAAATGAA TGCCGAGTCATGAAGGGAAACCCATCAGCCACAGCTGGCCCAAAGGCATCCCCAACACCTCAGAAGACTTCAGCCAAGAGCCCTGGTCCT ATGCGCCGAAGCAAGTCTCCAGCTGACTCAGGACCAAATTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGAAAACGTTCACATGTT TGTAGATTCTGATTCAACTTATTGCTCCAGTACAGTTTTCCTGGATACTATGCCTGAATCTCCAGCCTTATCCTTGCAAGACTTTCGAGG TGAGCCTGAGGTGAATCCATTGTACAGGGCAGACCCAGTGGACCTGGAGTTCTCGGTGGATCAGGTGGACTCAGTGGACCAGGAGGGCCC AATGGACCAGCAGGACCCAGAGAACCCAGTTGCCCCGTTGGACCAGGCAGGCCTGATGGATCCAGTGGATCCAGAGGACTCAGTGGACCT GGGGGCTGCTGGCGCAAGTGCTCAGCCATTACAGCCATCATCACCAGTTGCATATGACATCATTAGCCAGGAACTGGAACTGATGAAGAA GTTGAAGGAGCAGCTAGAAGAGAGGACTTGGTTGCTGCATGATGCCATCCAAAACCAGCAGAATGCATTGGAATTGATGATGGATCACCT TCAGAAGCAGCCAAACACATTACGCCACGTTGTCATTCCTGATCTCCAATCTTCGGAGGCAGTGCCCAAGAAACAACAGAAACAACACGC TGGGCAAGTGAAGCGGCCTCTCCCACATCCCAAGGACGTCAAGTGTTTCTGTGGTTTATCTTTATCCAACTCTCTCAAAAACACTGGGGA GCTTCAGGAGCCTTGTGTTGCCTTCAACCAGCAGCAACTGGTGCAGCAAGAACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAGCA GCTGCAACAGCTGAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATGCAGGAGAAGAAGAAGCTGCAGGAGCAGAAAATGCAGGAGAA GAAGAAGCTGCAGGAGCAGAGGCGGCAAAAGAAGAAGAAGCTACAGGAGCGGAAGAAGTGGCAGGGGCAGATGCTACAGAAAGAGCCAGA GGAGGAGCAGCAGAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAATGTCATCGTGGGGAATGAGAGGGTGCAGATATGCCTGCAAAA CCCACGTGACGTATCTGTGCCCCTCTGCAATCACCCTGTTAGATTTTTACAGGCCCAACCCATTGTTCCTGTCCAGAGAGCAGCTGAACA ACAGCCCTCTGGCTTCTATCAAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGTTTTTATCCTGAGGCGTATCAAGGGCCCCC CGTGAACCAGCTGCCATTGATAGATACCTCAAACTCTGAGGCAATTTCTTCTTCCAGCATTCCTCAGTTTCCCATAACTTCAGACTCAAC CATAAGCACCCTGGAGACCCCACAGGATTACATCCGGCTTTGGCAAGAGTTGTCTGATTCACTCGGTCCTGTTGTCCAAGTGAACACTTG GTCTTGCGATGAGCAGGGCACCCTGCACGGCCAACCCACCTACCATCAGGTGCAAGTTTCTGAGGTAGGAGTCGAGGGACCTCCTGATCC ACAGGCTTTCCAAGGCCCTGCTGCATACCAGCCAGACCAGATGAGATCTGCGGAGCAGACCAGATTGATGCCTGCAGAGCAACGTGACTC >In-frame_DCX_ENST00000488120_chrX_110574147_-_PASD1_ENST00000370357_chrX_150828185_+_2536nt ATGGAACTTGATTTTGGACACTTTGACGAAAGAGATAAGACATCCAGGAACATGCGAGGCTCCCGGATGAATGGGTTGCCTAGCCCCACT CACAGCGCCCACTGTAGCTTCTACCGAACCAGAACCTTGCAGGCACTGAGTAATGAGAAGAAAGCCAAGAAGGTACGTTTCTACCGCAAT GGGGACCGCTACTTCAAGGGGATTGTGTACGCTGTGTCCTCTGACCGTTTTCGCAGCTTTGACGCCTTGCTGGCTGACCTGACGCGATCT CTGTCTGACAACATCAACCTGCCTCAGGGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAGATCGGAAGCATGGATGAACTGGAG GAAGGGGAAAGCTATGTCTGTTCCTCAGACAACTTCTTTAAAAAGGTGGAGTACACCAAGAATGTCAATCCCAACTGGTCTGTCAACGTA AAAACATCTGCCAATATGAAAGCCCCCCAGTCCTTGGCTAGCAGCAACAGTGCACAGGCCAGGGAGAACAAGGACTTTGTGCGCCCCAAG CTGGTTACCATCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTGTGCTTCTGAACAAGAAGACAGCCCACTCTTTTGAGCAAGTC CTCACTGATATCACAGAAGCCATCAAACTGGAGACCGGGGTTGTCAAAAAACTCTACACTCTGGATGGAAAACAGGTAACTTGTCTCCAT GATTTCTTTGGTGATGATGATGTGTTTATTGCCTGTGGTCCTGAAAAATTTCGCTATGCTCAGGATGATTTTTCTCTGGATGAAAATGAA TGCCGAGTCATGAAGGGAAACCCATCAGCCACAGCTGGCCCAAAGGCATCCCCAACACCTCAGAAGACTTCAGCCAAGAGCCCTGGTCCT ATGCGCCGAAGCAAGTCTCCAGCTGACTCAGGACCAAATTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGAAAACGTTCACATGTT TGTAGATTCTGATTCAACTTATTGCTCCAGTACAGTTTTCCTGGATACTATGCCTGAATCTCCAGCCTTATCCTTGCAAGACTTTCGAGG TGAGCCTGAGGTGAATCCATTGTACAGGGCAGACCCAGTGGACCTGGAGTTCTCGGTGGATCAGGTGGACTCAGTGGACCAGGAGGGCCC AATGGACCAGCAGGACCCAGAGAACCCAGTTGCCCCGTTGGACCAGGCAGGCCTGATGGATCCAGTGGATCCAGAGGACTCAGTGGACCT GGGGGCTGCTGGCGCAAGTGCTCAGCCATTACAGCCATCATCACCAGTTGCATATGACATCATTAGCCAGGAACTGGAACTGATGAAGAA GTTGAAGGAGCAGCTAGAAGAGAGGACTTGGTTGCTGCATGATGCCATCCAAAACCAGCAGAATGCATTGGAATTGATGATGGATCACCT TCAGAAGCAGCCAAACACATTACGCCACGTTGTCATTCCTGATCTCCAATCTTCGGAGGCAGTGCCCAAGAAACAACAGAAACAACACGC TGGGCAAGTGAAGCGGCCTCTCCCACATCCCAAGGACGTCAAGTGTTTCTGTGGTTTATCTTTATCCAACTCTCTCAAAAACACTGGGGA GCTTCAGGAGCCTTGTGTTGCCTTCAACCAGCAGCAACTGGTGCAGCAAGAACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAGCA GCTGCAACAGCTGAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATGCAGGAGAAGAAGAAGCTGCAGGAGCAGAAAATGCAGGAGAA GAAGAAGCTGCAGGAGCAGAGGCGGCAAAAGAAGAAGAAGCTACAGGAGCGGAAGAAGTGGCAGGGGCAGATGCTACAGAAAGAGCCAGA GGAGGAGCAGCAGAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAATGTCATCGTGGGGAATGAGAGGGTGCAGATATGCCTGCAAAA CCCACGTGACGTATCTGTGCCCCTCTGCAATCACCCTGTTAGATTTTTACAGGCCCAACCCATTGTTCCTGTCCAGAGAGCAGCTGAACA ACAGCCCTCTGGCTTCTATCAAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGTTTTTATCCTGAGGCGTATCAAGGGCCCCC CGTGAACCAGCTGCCATTGATAGATACCTCAAACTCTGAGGCAATTTCTTCTTCCAGCATTCCTCAGTTTCCCATAACTTCAGACTCAAC CATAAGCACCCTGGAGACCCCACAGGATTACATCCGGCTTTGGCAAGAGTTGTCTGATTCACTCGGTCCTGTTGTCCAAGTGAACACTTG GTCTTGCGATGAGCAGGGCACCCTGCACGGCCAACCCACCTACCATCAGGTGCAAGTTTCTGAGGTAGGAGTCGAGGGACCTCCTGATCC ACAGGCTTTCCAAGGCCCTGCTGCATACCAGCCAGACCAGATGAGATCTGCGGAGCAGACCAGATTGATGCCTGCAGAGCAACGTGACTC >In-frame_DCX_ENST00000356915_chrX_110574132_-_PASD1_ENST00000370357_chrX_150828185_+_2551nt ATGGAACTTGATTTTGGACACTTTGACGAAAGAGATAAGACATCCAGGAACATGCGAGGCTCCCGGATGAATGGGTTGCCTAGCCCCACT CACAGCGCCCACTGTAGCTTCTACCGAACCAGAACCTTGCAGGCACTGAGTAATGAGAAGAAAGCCAAGAAGGTACGTTTCTACCGCAAT GGGGACCGCTACTTCAAGGGGATTGTGTACGCTGTGTCCTCTGACCGTTTTCGCAGCTTTGACGCCTTGCTGGCTGACCTGACGCGATCT CTGTCTGACAACATCAACCTGCCTCAGGGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAGATCGGAAGCATGGATGAACTGGAG GAAGGGGAAAGCTATGTCTGTTCCTCAGACAACTTCTTTAAAAAGGTGGAGTACACCAAGAATGTCAATCCCAACTGGTCTGTCAACGTA AAAACATCTGCCAATATGAAAGCCCCCCAGTCCTTGGCTAGCAGCAACAGTGCACAGGCCAGGGAGAACAAGGACTTTGTGCGCCCCAAG CTGGTTACCATCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTGTGCTTCTGAACAAGAAGACAGCCCACTCTTTTGAGCAAGTC CTCACTGATATCACAGAAGCCATCAAACTGGAGACCGGGGTTGTCAAAAAACTCTACACTCTGGATGGAAAACAGGTAACTTGTCTCCAT GATTTCTTTGGTGATGATGATGTGTTTATTGCCTGTGGTCCTGAAAAATTTCGCTATGCTCAGGATGATTTTTCTCTGGATGAAAATGAA TGCCGAGTCATGAAGGGAAACCCATCAGCCACAGCTGGCCCAAAGGCATCCCCAACACCTCAGAAGACTTCAGCCAAGAGCCCTGGTCCT ATGCGCCGAAGCAAGTCTCCAGCTGACTCAGGTAACGACCAAGACGGACCAAATTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGA AAACGTTCACATGTTTGTAGATTCTGATTCAACTTATTGCTCCAGTACAGTTTTCCTGGATACTATGCCTGAATCTCCAGCCTTATCCTT GCAAGACTTTCGAGGTGAGCCTGAGGTGAATCCATTGTACAGGGCAGACCCAGTGGACCTGGAGTTCTCGGTGGATCAGGTGGACTCAGT GGACCAGGAGGGCCCAATGGACCAGCAGGACCCAGAGAACCCAGTTGCCCCGTTGGACCAGGCAGGCCTGATGGATCCAGTGGATCCAGA GGACTCAGTGGACCTGGGGGCTGCTGGCGCAAGTGCTCAGCCATTACAGCCATCATCACCAGTTGCATATGACATCATTAGCCAGGAACT GGAACTGATGAAGAAGTTGAAGGAGCAGCTAGAAGAGAGGACTTGGTTGCTGCATGATGCCATCCAAAACCAGCAGAATGCATTGGAATT GATGATGGATCACCTTCAGAAGCAGCCAAACACATTACGCCACGTTGTCATTCCTGATCTCCAATCTTCGGAGGCAGTGCCCAAGAAACA ACAGAAACAACACGCTGGGCAAGTGAAGCGGCCTCTCCCACATCCCAAGGACGTCAAGTGTTTCTGTGGTTTATCTTTATCCAACTCTCT CAAAAACACTGGGGAGCTTCAGGAGCCTTGTGTTGCCTTCAACCAGCAGCAACTGGTGCAGCAAGAACAACACCTGAAGGAGCAGCAGCG GCAGCTGCGGGAGCAGCTGCAACAGCTGAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATGCAGGAGAAGAAGAAGCTGCAGGAGCA GAAAATGCAGGAGAAGAAGAAGCTGCAGGAGCAGAGGCGGCAAAAGAAGAAGAAGCTACAGGAGCGGAAGAAGTGGCAGGGGCAGATGCT ACAGAAAGAGCCAGAGGAGGAGCAGCAGAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAATGTCATCGTGGGGAATGAGAGGGTGCA GATATGCCTGCAAAACCCACGTGACGTATCTGTGCCCCTCTGCAATCACCCTGTTAGATTTTTACAGGCCCAACCCATTGTTCCTGTCCA GAGAGCAGCTGAACAACAGCCCTCTGGCTTCTATCAAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGTTTTTATCCTGAGGC GTATCAAGGGCCCCCCGTGAACCAGCTGCCATTGATAGATACCTCAAACTCTGAGGCAATTTCTTCTTCCAGCATTCCTCAGTTTCCCAT AACTTCAGACTCAACCATAAGCACCCTGGAGACCCCACAGGATTACATCCGGCTTTGGCAAGAGTTGTCTGATTCACTCGGTCCTGTTGT CCAAGTGAACACTTGGTCTTGCGATGAGCAGGGCACCCTGCACGGCCAACCCACCTACCATCAGGTGCAAGTTTCTGAGGTAGGAGTCGA GGGACCTCCTGATCCACAGGCTTTCCAAGGCCCTGCTGCATACCAGCCAGACCAGATGAGATCTGCGGAGCAGACCAGATTGATGCCTGC |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_DCX_ENST00000371993_chrX_110574147_-_PASD1_ENST00000370357_chrX_150828185_+_3263nt CACAAGGCAAAGCCTGCTCTCTCTGTCTCTCTGTCTCCTCTTCTCCTTTTTTGCCTTATTCTATCCGATTTTTTCCCTAAGCTTCTACCT GGGATTTTCCTTTGGAAAAGTCTCTGAGGTTCCACCAAAATATGGAACTTGATTTTGGACACTTTGACGAAAGAGATAAGACATCCAGGA ACATGCGAGGCTCCCGGATGAATGGGTTGCCTAGCCCCACTCACAGCGCCCACTGTAGCTTCTACCGAACCAGAACCTTGCAGGCACTGA GTAATGAGAAGAAAGCCAAGAAGGTACGTTTCTACCGCAATGGGGACCGCTACTTCAAGGGGATTGTGTACGCTGTGTCCTCTGACCGTT TTCGCAGCTTTGACGCCTTGCTGGCTGACCTGACGCGATCTCTGTCTGACAACATCAACCTGCCTCAGGGAGTGCGTTACATTTACACCA TTGATGGATCCAGGAAGATCGGAAGCATGGATGAACTGGAGGAAGGGGAAAGCTATGTCTGTTCCTCAGACAACTTCTTTAAAAAGGTGG AGTACACCAAGAATGTCAATCCCAACTGGTCTGTCAACGTAAAAACATCTGCCAATATGAAAGCCCCCCAGTCCTTGGCTAGCAGCAACA GTGCACAGGCCAGGGAGAACAAGGACTTTGTGCGCCCCAAGCTGGTTACCATCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTG TGCTTCTGAACAAGAAGACAGCCCACTCTTTTGAGCAAGTCCTCACTGATATCACAGAAGCCATCAAACTGGAGACCGGGGTTGTCAAAA AACTCTACACTCTGGATGGAAAACAGGTAACTTGTCTCCATGATTTCTTTGGTGATGATGATGTGTTTATTGCCTGTGGTCCTGAAAAAT TTCGCTATGCTCAGGATGATTTTTCTCTGGATGAAAATGAATGCCGAGTCATGAAGGGAAACCCATCAGCCACAGCTGGCCCAAAGGCAT CCCCAACACCTCAGAAGACTTCAGCCAAGAGCCCTGGTCCTATGCGCCGAAGCAAGTCTCCAGCTGACTCAGGACCAAATTGATATTGCA GAGGTTGAGCAGTATGGACCACAAGAAAACGTTCACATGTTTGTAGATTCTGATTCAACTTATTGCTCCAGTACAGTTTTCCTGGATACT ATGCCTGAATCTCCAGCCTTATCCTTGCAAGACTTTCGAGGTGAGCCTGAGGTGAATCCATTGTACAGGGCAGACCCAGTGGACCTGGAG TTCTCGGTGGATCAGGTGGACTCAGTGGACCAGGAGGGCCCAATGGACCAGCAGGACCCAGAGAACCCAGTTGCCCCGTTGGACCAGGCA GGCCTGATGGATCCAGTGGATCCAGAGGACTCAGTGGACCTGGGGGCTGCTGGCGCAAGTGCTCAGCCATTACAGCCATCATCACCAGTT GCATATGACATCATTAGCCAGGAACTGGAACTGATGAAGAAGTTGAAGGAGCAGCTAGAAGAGAGGACTTGGTTGCTGCATGATGCCATC CAAAACCAGCAGAATGCATTGGAATTGATGATGGATCACCTTCAGAAGCAGCCAAACACATTACGCCACGTTGTCATTCCTGATCTCCAA TCTTCGGAGGCAGTGCCCAAGAAACAACAGAAACAACACGCTGGGCAAGTGAAGCGGCCTCTCCCACATCCCAAGGACGTCAAGTGTTTC TGTGGTTTATCTTTATCCAACTCTCTCAAAAACACTGGGGAGCTTCAGGAGCCTTGTGTTGCCTTCAACCAGCAGCAACTGGTGCAGCAA GAACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAGCAGCTGCAACAGCTGAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATG CAGGAGAAGAAGAAGCTGCAGGAGCAGAAAATGCAGGAGAAGAAGAAGCTGCAGGAGCAGAGGCGGCAAAAGAAGAAGAAGCTACAGGAG CGGAAGAAGTGGCAGGGGCAGATGCTACAGAAAGAGCCAGAGGAGGAGCAGCAGAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAAT GTCATCGTGGGGAATGAGAGGGTGCAGATATGCCTGCAAAACCCACGTGACGTATCTGTGCCCCTCTGCAATCACCCTGTTAGATTTTTA CAGGCCCAACCCATTGTTCCTGTCCAGAGAGCAGCTGAACAACAGCCCTCTGGCTTCTATCAAGATGAAAACTGTGGGCAACAGGAAGAT GAGAGTCAAAGTTTTTATCCTGAGGCGTATCAAGGGCCCCCCGTGAACCAGCTGCCATTGATAGATACCTCAAACTCTGAGGCAATTTCT TCTTCCAGCATTCCTCAGTTTCCCATAACTTCAGACTCAACCATAAGCACCCTGGAGACCCCACAGGATTACATCCGGCTTTGGCAAGAG TTGTCTGATTCACTCGGTCCTGTTGTCCAAGTGAACACTTGGTCTTGCGATGAGCAGGGCACCCTGCACGGCCAACCCACCTACCATCAG GTGCAAGTTTCTGAGGTAGGAGTCGAGGGACCTCCTGATCCACAGGCTTTCCAAGGCCCTGCTGCATACCAGCCAGACCAGATGAGATCT GCGGAGCAGACCAGATTGATGCCTGCAGAGCAACGTGACTCAAATAAGCCGTGCTAACAGTACTTTCATGACCAGTGATGAGGGGAAATG GGGGGAGGGGGCAGGCCAATGAGGTCTGCATGGCCAGGGGACCTTCAAGGTGCGTAAAGTCCCTTGGGGTAGGGTTTAGTGGGTAGAGAC TTATTTGTTTCCTGATAGGTTATGTTTGTAATTGTTTGTTAAGCACAGCCTGTTTCTTGGAAGTTATGCTGTAGAGGCAGCCTGTGATCC GTAGTATGCTAGGGTGTGACAGCAGCCAGCCACAGCTGGATCTGATGTCTTGTCTGCCCCGCCCAGCTTTGCATATCCATGTTCTACCAC AGGAAGGTGGCCTGCCAAGAGTCTGCTCAAAGTTTTCAACATAAAGAATAAAGAAAAAAAAATGCCAAAGTGCTTTTCAATCTAGTAAAT CTAGAGGGTTGTTTTGTCTTAGCCACAAGAATTCCGAGGTCTTGACCCTGATGATCAACCTGCCTCCCCTCCATAGTCTTGTTGGAGAAG CCCAGAGAGAATGGGACTCCAACTAAGGGAACCTGAAATCAACTCAATGGAGGCACTTCAGAGCTAAAATAATTATGGCTTCCTTGCTTA >In-frame_DCX_ENST00000488120_chrX_110574147_-_PASD1_ENST00000370357_chrX_150828185_+_3392nt GAAACCTTTCTAGCTGTTAATGCAGCCTGTGAATTTTTTTAAAAGCATGTAATTAATCATAGGAGGTTGGGGGGATTCACTAAGCCTGAG TTACATGGGAGAAGCTGGACAAGGCACTAGGACCTAGAAGGCATCTATCCACCCTGGCAGGAATTTCTTGCTTGGAGCTCAGACAACAAA GGCATAGAGAGATTGGTTTTCTTTCTCTCAGCATCTCCACCCAACCAGCAGAAAACCGGTCTCTGAGGTTCCACCAAAATATGGAACTTG ATTTTGGACACTTTGACGAAAGAGATAAGACATCCAGGAACATGCGAGGCTCCCGGATGAATGGGTTGCCTAGCCCCACTCACAGCGCCC ACTGTAGCTTCTACCGAACCAGAACCTTGCAGGCACTGAGTAATGAGAAGAAAGCCAAGAAGGTACGTTTCTACCGCAATGGGGACCGCT ACTTCAAGGGGATTGTGTACGCTGTGTCCTCTGACCGTTTTCGCAGCTTTGACGCCTTGCTGGCTGACCTGACGCGATCTCTGTCTGACA ACATCAACCTGCCTCAGGGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAGATCGGAAGCATGGATGAACTGGAGGAAGGGGAAA GCTATGTCTGTTCCTCAGACAACTTCTTTAAAAAGGTGGAGTACACCAAGAATGTCAATCCCAACTGGTCTGTCAACGTAAAAACATCTG CCAATATGAAAGCCCCCCAGTCCTTGGCTAGCAGCAACAGTGCACAGGCCAGGGAGAACAAGGACTTTGTGCGCCCCAAGCTGGTTACCA TCATCCGCAGTGGGGTGAAGCCTCGGAAGGCTGTGCGTGTGCTTCTGAACAAGAAGACAGCCCACTCTTTTGAGCAAGTCCTCACTGATA TCACAGAAGCCATCAAACTGGAGACCGGGGTTGTCAAAAAACTCTACACTCTGGATGGAAAACAGGTAACTTGTCTCCATGATTTCTTTG GTGATGATGATGTGTTTATTGCCTGTGGTCCTGAAAAATTTCGCTATGCTCAGGATGATTTTTCTCTGGATGAAAATGAATGCCGAGTCA TGAAGGGAAACCCATCAGCCACAGCTGGCCCAAAGGCATCCCCAACACCTCAGAAGACTTCAGCCAAGAGCCCTGGTCCTATGCGCCGAA GCAAGTCTCCAGCTGACTCAGGACCAAATTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGAAAACGTTCACATGTTTGTAGATTCT GATTCAACTTATTGCTCCAGTACAGTTTTCCTGGATACTATGCCTGAATCTCCAGCCTTATCCTTGCAAGACTTTCGAGGTGAGCCTGAG GTGAATCCATTGTACAGGGCAGACCCAGTGGACCTGGAGTTCTCGGTGGATCAGGTGGACTCAGTGGACCAGGAGGGCCCAATGGACCAG CAGGACCCAGAGAACCCAGTTGCCCCGTTGGACCAGGCAGGCCTGATGGATCCAGTGGATCCAGAGGACTCAGTGGACCTGGGGGCTGCT GGCGCAAGTGCTCAGCCATTACAGCCATCATCACCAGTTGCATATGACATCATTAGCCAGGAACTGGAACTGATGAAGAAGTTGAAGGAG CAGCTAGAAGAGAGGACTTGGTTGCTGCATGATGCCATCCAAAACCAGCAGAATGCATTGGAATTGATGATGGATCACCTTCAGAAGCAG CCAAACACATTACGCCACGTTGTCATTCCTGATCTCCAATCTTCGGAGGCAGTGCCCAAGAAACAACAGAAACAACACGCTGGGCAAGTG AAGCGGCCTCTCCCACATCCCAAGGACGTCAAGTGTTTCTGTGGTTTATCTTTATCCAACTCTCTCAAAAACACTGGGGAGCTTCAGGAG CCTTGTGTTGCCTTCAACCAGCAGCAACTGGTGCAGCAAGAACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAGCAGCTGCAACAG CTGAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATGCAGGAGAAGAAGAAGCTGCAGGAGCAGAAAATGCAGGAGAAGAAGAAGCTG CAGGAGCAGAGGCGGCAAAAGAAGAAGAAGCTACAGGAGCGGAAGAAGTGGCAGGGGCAGATGCTACAGAAAGAGCCAGAGGAGGAGCAG CAGAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAATGTCATCGTGGGGAATGAGAGGGTGCAGATATGCCTGCAAAACCCACGTGAC GTATCTGTGCCCCTCTGCAATCACCCTGTTAGATTTTTACAGGCCCAACCCATTGTTCCTGTCCAGAGAGCAGCTGAACAACAGCCCTCT GGCTTCTATCAAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGTTTTTATCCTGAGGCGTATCAAGGGCCCCCCGTGAACCAG CTGCCATTGATAGATACCTCAAACTCTGAGGCAATTTCTTCTTCCAGCATTCCTCAGTTTCCCATAACTTCAGACTCAACCATAAGCACC CTGGAGACCCCACAGGATTACATCCGGCTTTGGCAAGAGTTGTCTGATTCACTCGGTCCTGTTGTCCAAGTGAACACTTGGTCTTGCGAT GAGCAGGGCACCCTGCACGGCCAACCCACCTACCATCAGGTGCAAGTTTCTGAGGTAGGAGTCGAGGGACCTCCTGATCCACAGGCTTTC CAAGGCCCTGCTGCATACCAGCCAGACCAGATGAGATCTGCGGAGCAGACCAGATTGATGCCTGCAGAGCAACGTGACTCAAATAAGCCG TGCTAACAGTACTTTCATGACCAGTGATGAGGGGAAATGGGGGGAGGGGGCAGGCCAATGAGGTCTGCATGGCCAGGGGACCTTCAAGGT GCGTAAAGTCCCTTGGGGTAGGGTTTAGTGGGTAGAGACTTATTTGTTTCCTGATAGGTTATGTTTGTAATTGTTTGTTAAGCACAGCCT GTTTCTTGGAAGTTATGCTGTAGAGGCAGCCTGTGATCCGTAGTATGCTAGGGTGTGACAGCAGCCAGCCACAGCTGGATCTGATGTCTT GTCTGCCCCGCCCAGCTTTGCATATCCATGTTCTACCACAGGAAGGTGGCCTGCCAAGAGTCTGCTCAAAGTTTTCAACATAAAGAATAA AGAAAAAAAAATGCCAAAGTGCTTTTCAATCTAGTAAATCTAGAGGGTTGTTTTGTCTTAGCCACAAGAATTCCGAGGTCTTGACCCTGA TGATCAACCTGCCTCCCCTCCATAGTCTTGTTGGAGAAGCCCAGAGAGAATGGGACTCCAACTAAGGGAACCTGAAATCAACTCAATGGA >In-frame_DCX_ENST00000356915_chrX_110574132_-_PASD1_ENST00000370357_chrX_150828185_+_3210nt TTTCTTTCTCTCAGCATCTCCACCCAACCAGCAGAAAACCGGTCTCTGAGGTTCCACCAAAATATGGAACTTGATTTTGGACACTTTGAC GAAAGAGATAAGACATCCAGGAACATGCGAGGCTCCCGGATGAATGGGTTGCCTAGCCCCACTCACAGCGCCCACTGTAGCTTCTACCGA ACCAGAACCTTGCAGGCACTGAGTAATGAGAAGAAAGCCAAGAAGGTACGTTTCTACCGCAATGGGGACCGCTACTTCAAGGGGATTGTG TACGCTGTGTCCTCTGACCGTTTTCGCAGCTTTGACGCCTTGCTGGCTGACCTGACGCGATCTCTGTCTGACAACATCAACCTGCCTCAG GGAGTGCGTTACATTTACACCATTGATGGATCCAGGAAGATCGGAAGCATGGATGAACTGGAGGAAGGGGAAAGCTATGTCTGTTCCTCA GACAACTTCTTTAAAAAGGTGGAGTACACCAAGAATGTCAATCCCAACTGGTCTGTCAACGTAAAAACATCTGCCAATATGAAAGCCCCC CAGTCCTTGGCTAGCAGCAACAGTGCACAGGCCAGGGAGAACAAGGACTTTGTGCGCCCCAAGCTGGTTACCATCATCCGCAGTGGGGTG AAGCCTCGGAAGGCTGTGCGTGTGCTTCTGAACAAGAAGACAGCCCACTCTTTTGAGCAAGTCCTCACTGATATCACAGAAGCCATCAAA CTGGAGACCGGGGTTGTCAAAAAACTCTACACTCTGGATGGAAAACAGGTAACTTGTCTCCATGATTTCTTTGGTGATGATGATGTGTTT ATTGCCTGTGGTCCTGAAAAATTTCGCTATGCTCAGGATGATTTTTCTCTGGATGAAAATGAATGCCGAGTCATGAAGGGAAACCCATCA GCCACAGCTGGCCCAAAGGCATCCCCAACACCTCAGAAGACTTCAGCCAAGAGCCCTGGTCCTATGCGCCGAAGCAAGTCTCCAGCTGAC TCAGGTAACGACCAAGACGGACCAAATTGATATTGCAGAGGTTGAGCAGTATGGACCACAAGAAAACGTTCACATGTTTGTAGATTCTGA TTCAACTTATTGCTCCAGTACAGTTTTCCTGGATACTATGCCTGAATCTCCAGCCTTATCCTTGCAAGACTTTCGAGGTGAGCCTGAGGT GAATCCATTGTACAGGGCAGACCCAGTGGACCTGGAGTTCTCGGTGGATCAGGTGGACTCAGTGGACCAGGAGGGCCCAATGGACCAGCA GGACCCAGAGAACCCAGTTGCCCCGTTGGACCAGGCAGGCCTGATGGATCCAGTGGATCCAGAGGACTCAGTGGACCTGGGGGCTGCTGG CGCAAGTGCTCAGCCATTACAGCCATCATCACCAGTTGCATATGACATCATTAGCCAGGAACTGGAACTGATGAAGAAGTTGAAGGAGCA GCTAGAAGAGAGGACTTGGTTGCTGCATGATGCCATCCAAAACCAGCAGAATGCATTGGAATTGATGATGGATCACCTTCAGAAGCAGCC AAACACATTACGCCACGTTGTCATTCCTGATCTCCAATCTTCGGAGGCAGTGCCCAAGAAACAACAGAAACAACACGCTGGGCAAGTGAA GCGGCCTCTCCCACATCCCAAGGACGTCAAGTGTTTCTGTGGTTTATCTTTATCCAACTCTCTCAAAAACACTGGGGAGCTTCAGGAGCC TTGTGTTGCCTTCAACCAGCAGCAACTGGTGCAGCAAGAACAACACCTGAAGGAGCAGCAGCGGCAGCTGCGGGAGCAGCTGCAACAGCT GAGAGAGCAAAGGAAGGTGCAGAAGCAGAAGAAGATGCAGGAGAAGAAGAAGCTGCAGGAGCAGAAAATGCAGGAGAAGAAGAAGCTGCA GGAGCAGAGGCGGCAAAAGAAGAAGAAGCTACAGGAGCGGAAGAAGTGGCAGGGGCAGATGCTACAGAAAGAGCCAGAGGAGGAGCAGCA GAAGCAGCAGCTGCAAGAGCAGCCACTGAAGCATAATGTCATCGTGGGGAATGAGAGGGTGCAGATATGCCTGCAAAACCCACGTGACGT ATCTGTGCCCCTCTGCAATCACCCTGTTAGATTTTTACAGGCCCAACCCATTGTTCCTGTCCAGAGAGCAGCTGAACAACAGCCCTCTGG CTTCTATCAAGATGAAAACTGTGGGCAACAGGAAGATGAGAGTCAAAGTTTTTATCCTGAGGCGTATCAAGGGCCCCCCGTGAACCAGCT GCCATTGATAGATACCTCAAACTCTGAGGCAATTTCTTCTTCCAGCATTCCTCAGTTTCCCATAACTTCAGACTCAACCATAAGCACCCT GGAGACCCCACAGGATTACATCCGGCTTTGGCAAGAGTTGTCTGATTCACTCGGTCCTGTTGTCCAAGTGAACACTTGGTCTTGCGATGA GCAGGGCACCCTGCACGGCCAACCCACCTACCATCAGGTGCAAGTTTCTGAGGTAGGAGTCGAGGGACCTCCTGATCCACAGGCTTTCCA AGGCCCTGCTGCATACCAGCCAGACCAGATGAGATCTGCGGAGCAGACCAGATTGATGCCTGCAGAGCAACGTGACTCAAATAAGCCGTG CTAACAGTACTTTCATGACCAGTGATGAGGGGAAATGGGGGGAGGGGGCAGGCCAATGAGGTCTGCATGGCCAGGGGACCTTCAAGGTGC GTAAAGTCCCTTGGGGTAGGGTTTAGTGGGTAGAGACTTATTTGTTTCCTGATAGGTTATGTTTGTAATTGTTTGTTAAGCACAGCCTGT TTCTTGGAAGTTATGCTGTAGAGGCAGCCTGTGATCCGTAGTATGCTAGGGTGTGACAGCAGCCAGCCACAGCTGGATCTGATGTCTTGT CTGCCCCGCCCAGCTTTGCATATCCATGTTCTACCACAGGAAGGTGGCCTGCCAAGAGTCTGCTCAAAGTTTTCAACATAAAGAATAAAG AAAAAAAAATGCCAAAGTGCTTTTCAATCTAGTAAATCTAGAGGGTTGTTTTGTCTTAGCCACAAGAATTCCGAGGTCTTGACCCTGATG ATCAACCTGCCTCCCCTCCATAGTCTTGTTGGAGAAGCCCAGAGAGAATGGGACTCCAACTAAGGGAACCTGAAATCAACTCAATGGAGG |
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FusionGenePPI for DCX_PASD1 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| DCX | PAFAH1B1, DCX, USP9X, SPP1, TERF1, TINF2, ACD, POT1, PPP1CA, PPP1R9B, APP, FBXO25, TRIM23, GOLGA2, KIFC3, MEOX1, TRIM27, ZBTB5, CALCOCO2, IKZF1, SPAG5, MID2, RINT1, KRT40, KRTAP10-8, HAX1, NUFIP1, DCLK1, NMNAT3, DIS3, CUL1, NTRK1, DGUOK, NDUFA10, LGALS9C, RGL4, DPF3, AGTR1, DNAAF2, RNF13, MTERF2 | PASD1 | APP |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for DCX_PASD1 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for DCX_PASD1 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | DCX | C1848199 | X-Linked Lissencephaly | 11 | ORPHANET;UNIPROT |
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