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Fusion gene ID: 9058 |
FusionGeneSummary for CXCL13_UTRN |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CXCL13_UTRN | Fusion gene ID: 9058 | Hgene | Tgene | Gene symbol | CXCL13 | UTRN | Gene ID | 10563 | 7402 |
| Gene name | C-X-C motif chemokine ligand 13 | utrophin | |
| Synonyms | ANGIE|ANGIE2|BCA-1|BCA1|BLC|BLR1L|SCYB13 | DMDL|DRP|DRP1 | |
| Cytomap | 4q21.1 | 6q24.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | C-X-C motif chemokine 13B-cell chemoattractantB-cell-attracting chemokine 1B-cell-homing chemokine (ligand for Burkitt's lymphoma receptor-1)B-lymphocyte chemoattractantCXC chemokine BLCb cell-attracting chemokine 1b lymphocyte chemoattractantchem | utrophinDRP-1dystrophin-related protein 1 | |
| Modification date | 20180523 | 20180519 | |
| UniProtAcc | O43927 | P46939 | |
| Ensembl transtripts involved in fusion gene | ENST00000286758, | ENST00000367545, ENST00000367526, ENST00000480333, | |
| Fusion gene scores | * DoF score | 1 X 1 X 1=1 | 33 X 9 X 9=2673 |
| # samples | 1 | 33 | |
| ** MAII score | log2(1/1*10)=3.32192809488736 | log2(33/2673*10)=-3.01792190799726 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CXCL13 [Title/Abstract] AND UTRN [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | CXCL13 | GO:0007166 | cell surface receptor signaling pathway | 11554781 |
| Hgene | CXCL13 | GO:0007204 | positive regulation of cytosolic calcium ion concentration | 11554781 |
| Hgene | CXCL13 | GO:0007267 | cell-cell signaling | 11554781 |
| Hgene | CXCL13 | GO:0010820 | positive regulation of T cell chemotaxis | 11554781 |
| Hgene | CXCL13 | GO:0035754 | B cell chemotaxis | 9463416 |
| Hgene | CXCL13 | GO:0035768 | endothelial cell chemotaxis to fibroblast growth factor | 11708770 |
| Hgene | CXCL13 | GO:0042742 | defense response to bacterium | 17562761 |
| Hgene | CXCL13 | GO:2000545 | negative regulation of endothelial cell chemotaxis to fibroblast growth factor | 11708770 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | LUSC | TCGA-85-7950-01A | CXCL13 | chr4 | 78532988 | + | UTRN | chr6 | 144665237 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| 5CDS-intron | ENST00000286758 | ENST00000367545 | CXCL13 | chr4 | 78532988 | + | UTRN | chr6 | 144665237 | + |
| 5CDS-intron | ENST00000286758 | ENST00000367526 | CXCL13 | chr4 | 78532988 | + | UTRN | chr6 | 144665237 | + |
| 5CDS-intron | ENST00000286758 | ENST00000480333 | CXCL13 | chr4 | 78532988 | + | UTRN | chr6 | 144665237 | + |
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FusionProtFeatures for CXCL13_UTRN |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CXCL13 | UTRN |
| Chemotactic for B-lymphocytes but not for T-lymphocytes,monocytes and neutrophils. Does not induce calcium release in B-lymphocytes. Binds to BLR1/CXCR5. | May play a role in anchoring the cytoskeleton to theplasma membrane. {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CXCL13_UTRN |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CXCL13_UTRN |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CXCL13 | EEF1G, CXCR3, CDKN1A, ACKR4 | UTRN | SNTA1, SNTB2, DAG1, UTRN, DTNA, PGM5, USP21, MARK2, PIK3CG, TERF1, TERF2, MME, DISC1, SIRT7, THOC1, RRP9, THOC2, THOC6, THOC5, UBE2D1, ZC3H15, XPO4, THOC3, UBE3C, PTPN12, NPM1, ADRA1D, LATS2, SAV1, OBSL1, CCDC8, L3HYPDH, IER2, USP7, CALM1, PTEN, MED4, TMEM17, PDK3, PI4KB, TTK, RBM8A, MCM2, ATOH1, CDH1, TENC1, TNS1, TNS3, SNTG2, NDEL1, DMD, CPNE5, FAM167A, RHPN1, PTRF, VHL, CPNE4, TTC30B, FAM189B, PHF19, TES |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CXCL13_UTRN |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| Tgene | UTRN | P46939 | DB01593 | Zinc | Utrophin | small molecule | approved|investigational |
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RelatedDiseases for CXCL13_UTRN |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | CXCL13 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
| Hgene | CXCL13 | C0345967 | Malignant mesothelioma | 1 | CTD_human |
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