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Fusion gene ID: 8956 |
FusionGeneSummary for CTTN_PSME2 |
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Fusion gene information | Fusion gene name: CTTN_PSME2 | Fusion gene ID: 8956 | Hgene | Tgene | Gene symbol | CTTN | PSME2 | Gene ID | 2017 | 5721 |
Gene name | cortactin | proteasome activator subunit 2 | |
Synonyms | EMS1 | PA28B|PA28beta|REGbeta | |
Cytomap | 11q13.3 | 14q12 | |
Type of gene | protein-coding | protein-coding | |
Description | src substrate cortactin1110020L01Rikamplaxinems1 sequence (mammary tumor and squamous cell carcinoma-associated (p80/85 src substrate)oncogene EMS1 | proteasome activator complex subunit 211S regulator complex beta subunit11S regulator complex subunit betaMCP activator, 31-kD subunitREG-betaactivator of multicatalytic protease subunit 2cell migration-inducing protein 22proteasome (prosome, macro | |
Modification date | 20180522 | 20180523 | |
UniProtAcc | Q14247 | Q9UL46 | |
Ensembl transtripts involved in fusion gene | ENST00000346329, ENST00000301843, ENST00000527622, ENST00000376561, ENST00000538675, | ENST00000560410, ENST00000216802, ENST00000471700, | |
Fusion gene scores | * DoF score | 24 X 15 X 9=3240 | 2 X 2 X 2=8 |
# samples | 26 | 2 | |
** MAII score | log2(26/3240*10)=-3.63941028474353 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: CTTN [Title/Abstract] AND PSME2 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | BRCA | TCGA-A2-A0EQ-01A | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5UTR-3CDS | ENST00000346329 | ENST00000560410 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-3CDS | ENST00000346329 | ENST00000216802 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-5UTR | ENST00000346329 | ENST00000471700 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-3CDS | ENST00000301843 | ENST00000560410 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-3CDS | ENST00000301843 | ENST00000216802 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-5UTR | ENST00000301843 | ENST00000471700 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
3UTR-3CDS | ENST00000527622 | ENST00000560410 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
3UTR-3CDS | ENST00000527622 | ENST00000216802 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
3UTR-5UTR | ENST00000527622 | ENST00000471700 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-3CDS | ENST00000376561 | ENST00000560410 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-3CDS | ENST00000376561 | ENST00000216802 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
5UTR-5UTR | ENST00000376561 | ENST00000471700 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
intron-3CDS | ENST00000538675 | ENST00000560410 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
intron-3CDS | ENST00000538675 | ENST00000216802 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
intron-5UTR | ENST00000538675 | ENST00000471700 | CTTN | chr11 | 70244720 | + | PSME2 | chr14 | 24612880 | - |
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FusionProtFeatures for CTTN_PSME2 |
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Hgene | Tgene |
CTTN | PSME2 |
Contributes to the organization of the actincytoskeleton and cell shape (PubMed:21296879). Plays a role in theformation of lamellipodia and in cell migration. Plays a role inthe regulation of neuron morphology, axon growth and formation ofneuronal growth cones (By similarity). Through its interactionwith CTTNBP2, involved in the regulation of neuronal spine density(By similarity). Plays a role in the invasiveness of cancer cells,and the formation of metastases (PubMed:16636290). Plays a role infocal adhesion assembly and turnover (By similarity). In complexwith ABL1 and MYLK regulates cortical actin-based cytoskeletalrearrangement critical to sphingosine 1-phosphate (S1P)-mediatedendothelial cell (EC) barrier enhancement (PubMed:20861316). Playsa role in intracellular protein transport and endocytosis, and inmodulating the levels of potassium channels present at the cellmembrane (PubMed:17959782). Plays a role in receptor-mediatedendocytosis via clathrin-coated pits (By similarity). Required forstabilization of KCNH1 channels at the cell membrane(PubMed:23144454). {ECO:0000250|UniProtKB:Q60598,ECO:0000250|UniProtKB:Q66HL2, ECO:0000269|PubMed:16636290,ECO:0000269|PubMed:17959782, ECO:0000269|PubMed:21296879,ECO:0000269|PubMed:23144454}. | Implicated in immunoproteasome assembly and required forefficient antigen processing. The PA28 activator complex enhancesthe generation of class I binding peptides by altering thecleavage pattern of the proteasome. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CTTN_PSME2 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CTTN_PSME2 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CTTN | SHANK2, WIPF1, CTNND1, CHD3, FER, WASL, ARHGAP17, CRB2, CASP3, MYLK, ACTR2, ACTR3, ARPC2, ARPC4, ARPC3, KCNA2, SYK, SDC3, SIRT1, EP300, HDAC6, RAD21, BTRC, ELAVL1, ARRB1, ARRB2, CD2AP, ASAP1, SH3PXD2A, PTK2, TINF2, ACD, CBLL1, CUL3, PXN, TNK2, GRB2, SDHAF2, SART3, THY1, PLAUR, UBL4A, SUCLG2, OXCT1, ABI1, NONO, CORO1B, DNM2, ATF2, NCF1, PAN2, NPM1, LMNA, ACTG1, APEH, ATG7, ATP6V1C1, CTNNA1, GARS, IDE, ME1, RDX, SHMT1, SHMT2, SSB, STAT1, VTA1, GSPT1, GSPT2, SARS, SNX1, SNX2, UGDH, RPA3, RPA2, RPA1, CTTN, CDC37, SPRR2A, OBSL1, EGFR, COPS7A, HEXIM1, MYO1E, USO1, NTRK1, EWSR1, CAPZA2, DBN1, FLNA, KIFC3, MLH1, MYH9, PPP1CB, IQGAP1, SYNCRIP, SYNPO, MYO5C, MYO19, NOP9, MYO18A, TRIM15, NEDD9, SNW1, KCNA3, SMURF1, YES1, CDH1, PDHA1, TES, KEAP1, TXNIP | PSME2 | PSME2, PSME1, MGMT, PARD3, PSMA2, PSMB6, PSMB9, PSMA4, PSMD6, PSMB7, PSMB8, PSMB10, APP, PSMC5, PSMC2, PSMA5, PSMA1, PSMB3, PSMA6, PSMA3, PSMB1, PSMD7, PSMC1, PSMD2, PSMC4, PSMB5, PSMD1, CAP1, PTMA, GARS, DDTL, TNN, CFTR, PARK2, BAG3, NHLH1, EPHA2, MYOD1, SHFM1, PSMD14, NAA10, CTRL, PSMB4, NTRK1, MCM2, U2AF2, PSMB2, SPPL2B, FBXO7, TMCO3, CDK15, SDCBP, FGB, RNF26, HSD17B10, SOD1, CCND2, SIRT7 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CTTN_PSME2 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CTTN_PSME2 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CTTN | C0007137 | Squamous cell carcinoma | 1 | CTD_human |
Hgene | CTTN | C0023531 | Leukoplakia | 1 | CTD_human |
Hgene | CTTN | C3495559 | Juvenile arthritis | 1 | CTD_human |
Tgene | PSME2 | C0019693 | HIV Infections | 1 | CTD_human |
Tgene | PSME2 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
Tgene | PSME2 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |