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Fusion gene ID: 8918 |
FusionGeneSummary for CTSO_NAA15 |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CTSO_NAA15 | Fusion gene ID: 8918 | Hgene | Tgene | Gene symbol | CTSO | NAA15 | Gene ID | 1519 | 80155 |
| Gene name | cathepsin O | N(alpha)-acetyltransferase 15, NatA auxiliary subunit | |
| Synonyms | CTSO1 | Ga19|MRD50|NARG1|NAT1P|NATH|TBDN|TBDN100 | |
| Cytomap | 4q32.1 | 4q31.1 | |
| Type of gene | protein-coding | protein-coding | |
| Description | cathepsin O | N-alpha-acetyltransferase 15, NatA auxiliary subunitN-terminal acetyltransferaseNMDA receptor regulated 1NMDA receptor-regulated protein 1gastric cancer antigen Ga19protein tubedown-1transcriptional coactivator tubedown-100tubedown-1 | |
| Modification date | 20180523 | 20180523 | |
| UniProtAcc | P43234 | Q9BXJ9 | |
| Ensembl transtripts involved in fusion gene | ENST00000433477, | ENST00000296543, ENST00000398947, ENST00000480277, ENST00000515576, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 7 X 5 X 7=245 |
| # samples | 2 | 7 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(7/245*10)=-1.8073549220576 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CTSO [Title/Abstract] AND NAA15 [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Tgene | NAA15 | GO:0006474 | N-terminal protein amino acid acetylation | 15496142 |
| Tgene | NAA15 | GO:0045893 | positive regulation of transcription, DNA-templated | 12145306 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | COAD | TCGA-AA-3495-01A | CTSO | chr4 | 156849488 | - | NAA15 | chr4 | 140305986 | + |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000433477 | ENST00000296543 | CTSO | chr4 | 156849488 | - | NAA15 | chr4 | 140305986 | + |
| In-frame | ENST00000433477 | ENST00000398947 | CTSO | chr4 | 156849488 | - | NAA15 | chr4 | 140305986 | + |
| 5CDS-intron | ENST00000433477 | ENST00000480277 | CTSO | chr4 | 156849488 | - | NAA15 | chr4 | 140305986 | + |
| 5CDS-intron | ENST00000433477 | ENST00000515576 | CTSO | chr4 | 156849488 | - | NAA15 | chr4 | 140305986 | + |
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FusionProtFeatures for CTSO_NAA15 |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CTSO | NAA15 |
| Proteolytic enzyme possibly involved in normal cellularprotein degradation and turnover. | Auxillary subunit of the N-terminal acetyltransferase A(NatA) complex which displays alpha (N-terminal) acetyltransferaseactivity. The NAT activity may be important for vascular,hematopoietic and neuronal growth and development. Required tocontrol retinal neovascularization in adult ocular endothelialcells. In complex with XRCC6 and XRCC5 (Ku80), up-regulatestranscription from the osteocalcin promoter.{ECO:0000269|PubMed:11687548, ECO:0000269|PubMed:12145306,ECO:0000269|PubMed:15496142}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 629_632 | 718 | 867 | Compositional bias | Note=Poly-Asp |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 612_629 | 718 | 867 | Motif | Bipartite nuclear localization signal |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 148_184 | 718 | 867 | Repeat | Note=TPR 3 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 224_257 | 718 | 867 | Repeat | Note=TPR 4 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 374_407 | 718 | 867 | Repeat | Note=TPR 5 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 409_441 | 718 | 867 | Repeat | Note=TPR 6 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 46_79 | 718 | 867 | Repeat | Note=TPR 1 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 485_518 | 718 | 867 | Repeat | Note=TPR 7 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 672_705 | 718 | 867 | Repeat | Note=TPR 8 |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 80_113 | 718 | 867 | Repeat | Note=TPR 2 |
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FusionGeneSequence for CTSO_NAA15 |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_CTSO_ENST00000433477_chr4_156849488_-_NAA15_ENST00000296543_chr4_140305986_+_459aa MDVRALPWLPWLLWLLCRGGGDADSRAPFTPTWPRSREREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSKPS KFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYNNYGCNGGSTLNALN WLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHA VLITGFDKTGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCAVCESKDLSDTVRTVLKQEMNRLFGATNPKNFNETFLKRNSDSLPHRLSA AKMVYYLDPSSQKRAIELATTLDESLTNRNLQTCMEVLEALYDGSLGDCKEAAEIYRANCHKLFPYALAFMPPGYEEDMKITVNGDSSAE >In-frame_CTSO_ENST00000433477_chr4_156849488_-_NAA15_ENST00000398947_chr4_140305986_+_458aa MDVRALPWLPWLLWLLCRGGGDADSRAPFTPTWPRSREREAAAFRESLNRHRYLNSLFPSENSTAFYGINQFSYLFPEEFKAIYLRSKPS KFPRYSAEVHMSIPNVSLPLRFDWRDKQVVTQVRNQQMCGGCWAFSVVGAVESAYAIKGKPLEDLSVQQVIDCSYNNYGCNGGSTLNALN WLNKMQVKLVKDSEYPFKAQNGLCHYFSGSHSGFSIKGYSAYDFSDQEDEMAKALLTFGPLVVIVDAVSWQDYLGGIIQHHCSSGEANHA VLITGFDKTGSTPYWIVRNSWGSSWGVDGYAHVKMGSNVCVCESKDLSDTVRTVLKQEMNRLFGATNPKNFNETFLKRNSDSLPHRLSAA KMVYYLDPSSQKRAIELATTLDESLTNRNLQTCMEVLEALYDGSLGDCKEAAEIYRANCHKLFPYALAFMPPGYEEDMKITVNGDSSAEA |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_CTSO_ENST00000433477_chr4_156849488_-_NAA15_ENST00000296543_chr4_140305986_+_1377nt ATGGACGTGCGGGCGCTGCCGTGGCTGCCGTGGCTGCTGTGGCTGCTGTGCCGGGGCGGCGGCGATGCGGACTCCCGCGCCCCCTTCACC CCGACCTGGCCGCGGAGCCGCGAGCGTGAAGCCGCCGCCTTCCGGGAAAGTCTTAATAGACATCGATACTTGAATTCTTTATTTCCCAGT GAAAACTCCACCGCCTTCTATGGAATAAATCAGTTTTCCTATTTGTTTCCTGAAGAGTTTAAAGCCATTTATTTAAGAAGCAAACCTTCC AAGTTTCCCAGATACTCAGCAGAAGTACATATGTCCATCCCCAATGTGTCTTTGCCGTTAAGATTTGACTGGAGGGACAAGCAGGTTGTG ACACAAGTGAGAAACCAGCAGATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGGGGGCAGTGGAATCTGCTTATGCAATAAAGGGGAAG CCCCTGGAAGACCTAAGTGTCCAGCAGGTCATTGACTGTTCGTATAATAATTATGGCTGCAATGGAGGCTCTACTCTCAATGCTTTGAAC TGGTTAAACAAGATGCAAGTAAAACTGGTGAAAGATTCAGAATATCCTTTTAAAGCACAAAATGGTCTGTGCCATTACTTTTCTGGTTCA CATTCTGGATTTTCAATCAAAGGTTATTCTGCATATGACTTCAGTGACCAAGAAGATGAAATGGCAAAAGCACTTCTTACCTTTGGCCCT TTGGTAGTCATAGTAGATGCAGTGAGCTGGCAAGATTATCTGGGAGGCATTATACAGCATCACTGCTCTAGTGGAGAAGCAAATCATGCA GTTCTCATAACTGGGTTTGATAAAACAGGAAGCACTCCATATTGGATTGTGCGGAATTCCTGGGGAAGTTCTTGGGGAGTAGATGGTTAT GCCCATGTCAAAATGGGAAGTAATGTTTGTGCAGTGTGTGAAAGTAAAGATTTATCTGATACAGTTAGAACAGTATTAAAACAAGAAATG AATCGTCTTTTTGGAGCAACGAATCCAAAGAATTTTAATGAAACTTTTCTGAAAAGGAATTCTGATTCATTGCCACACAGATTATCAGCT GCCAAAATGGTATATTACTTAGATCCTTCTAGTCAGAAGCGAGCTATAGAGTTGGCAACAACACTTGATGAATCTCTCACTAACAGAAAC CTCCAGACATGTATGGAGGTATTGGAAGCCTTGTATGATGGTAGCCTAGGAGACTGTAAAGAAGCTGCTGAAATTTATAGAGCAAATTGT CATAAGCTTTTCCCTTATGCTTTGGCTTTCATGCCTCCTGGATATGAAGAGGATATGAAGATCACAGTTAATGGAGATAGTTCTGCAGAA >In-frame_CTSO_ENST00000433477_chr4_156849488_-_NAA15_ENST00000398947_chr4_140305986_+_1374nt ATGGACGTGCGGGCGCTGCCGTGGCTGCCGTGGCTGCTGTGGCTGCTGTGCCGGGGCGGCGGCGATGCGGACTCCCGCGCCCCCTTCACC CCGACCTGGCCGCGGAGCCGCGAGCGTGAAGCCGCCGCCTTCCGGGAAAGTCTTAATAGACATCGATACTTGAATTCTTTATTTCCCAGT GAAAACTCCACCGCCTTCTATGGAATAAATCAGTTTTCCTATTTGTTTCCTGAAGAGTTTAAAGCCATTTATTTAAGAAGCAAACCTTCC AAGTTTCCCAGATACTCAGCAGAAGTACATATGTCCATCCCCAATGTGTCTTTGCCGTTAAGATTTGACTGGAGGGACAAGCAGGTTGTG ACACAAGTGAGAAACCAGCAGATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGGGGGCAGTGGAATCTGCTTATGCAATAAAGGGGAAG CCCCTGGAAGACCTAAGTGTCCAGCAGGTCATTGACTGTTCGTATAATAATTATGGCTGCAATGGAGGCTCTACTCTCAATGCTTTGAAC TGGTTAAACAAGATGCAAGTAAAACTGGTGAAAGATTCAGAATATCCTTTTAAAGCACAAAATGGTCTGTGCCATTACTTTTCTGGTTCA CATTCTGGATTTTCAATCAAAGGTTATTCTGCATATGACTTCAGTGACCAAGAAGATGAAATGGCAAAAGCACTTCTTACCTTTGGCCCT TTGGTAGTCATAGTAGATGCAGTGAGCTGGCAAGATTATCTGGGAGGCATTATACAGCATCACTGCTCTAGTGGAGAAGCAAATCATGCA GTTCTCATAACTGGGTTTGATAAAACAGGAAGCACTCCATATTGGATTGTGCGGAATTCCTGGGGAAGTTCTTGGGGAGTAGATGGTTAT GCCCATGTCAAAATGGGAAGTAATGTTTGTGTGTGTGAAAGTAAAGATTTATCTGATACAGTTAGAACAGTATTAAAACAAGAAATGAAT CGTCTTTTTGGAGCAACGAATCCAAAGAATTTTAATGAAACTTTTCTGAAAAGGAATTCTGATTCATTGCCACACAGATTATCAGCTGCC AAAATGGTATATTACTTAGATCCTTCTAGTCAGAAGCGAGCTATAGAGTTGGCAACAACACTTGATGAATCTCTCACTAACAGAAACCTC CAGACATGTATGGAGGTATTGGAAGCCTTGTATGATGGTAGCCTAGGAGACTGTAAAGAAGCTGCTGAAATTTATAGAGCAAATTGTCAT AAGCTTTTCCCTTATGCTTTGGCTTTCATGCCTCCTGGATATGAAGAGGATATGAAGATCACAGTTAATGGAGATAGTTCTGCAGAAGCT |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_CTSO_ENST00000433477_chr4_156849488_-_NAA15_ENST00000296543_chr4_140305986_+_4745nt AGGCTGGGAGGAGCCGAGGAACCGAAAGAGAAAACAGGCCGCGCGGGCGGCAGAGGAGCCGGGCGCCGCAATGGACGTGCGGGCGCTGCC GTGGCTGCCGTGGCTGCTGTGGCTGCTGTGCCGGGGCGGCGGCGATGCGGACTCCCGCGCCCCCTTCACCCCGACCTGGCCGCGGAGCCG CGAGCGTGAAGCCGCCGCCTTCCGGGAAAGTCTTAATAGACATCGATACTTGAATTCTTTATTTCCCAGTGAAAACTCCACCGCCTTCTA TGGAATAAATCAGTTTTCCTATTTGTTTCCTGAAGAGTTTAAAGCCATTTATTTAAGAAGCAAACCTTCCAAGTTTCCCAGATACTCAGC AGAAGTACATATGTCCATCCCCAATGTGTCTTTGCCGTTAAGATTTGACTGGAGGGACAAGCAGGTTGTGACACAAGTGAGAAACCAGCA GATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGGGGGCAGTGGAATCTGCTTATGCAATAAAGGGGAAGCCCCTGGAAGACCTAAGTGT CCAGCAGGTCATTGACTGTTCGTATAATAATTATGGCTGCAATGGAGGCTCTACTCTCAATGCTTTGAACTGGTTAAACAAGATGCAAGT AAAACTGGTGAAAGATTCAGAATATCCTTTTAAAGCACAAAATGGTCTGTGCCATTACTTTTCTGGTTCACATTCTGGATTTTCAATCAA AGGTTATTCTGCATATGACTTCAGTGACCAAGAAGATGAAATGGCAAAAGCACTTCTTACCTTTGGCCCTTTGGTAGTCATAGTAGATGC AGTGAGCTGGCAAGATTATCTGGGAGGCATTATACAGCATCACTGCTCTAGTGGAGAAGCAAATCATGCAGTTCTCATAACTGGGTTTGA TAAAACAGGAAGCACTCCATATTGGATTGTGCGGAATTCCTGGGGAAGTTCTTGGGGAGTAGATGGTTATGCCCATGTCAAAATGGGAAG TAATGTTTGTGCAGTGTGTGAAAGTAAAGATTTATCTGATACAGTTAGAACAGTATTAAAACAAGAAATGAATCGTCTTTTTGGAGCAAC GAATCCAAAGAATTTTAATGAAACTTTTCTGAAAAGGAATTCTGATTCATTGCCACACAGATTATCAGCTGCCAAAATGGTATATTACTT AGATCCTTCTAGTCAGAAGCGAGCTATAGAGTTGGCAACAACACTTGATGAATCTCTCACTAACAGAAACCTCCAGACATGTATGGAGGT ATTGGAAGCCTTGTATGATGGTAGCCTAGGAGACTGTAAAGAAGCTGCTGAAATTTATAGAGCAAATTGTCATAAGCTTTTCCCTTATGC TTTGGCTTTCATGCCTCCTGGATATGAAGAGGATATGAAGATCACAGTTAATGGAGATAGTTCTGCAGAAGCTGAAGAACTGGCCAATGA AATTTGAACATCACTAAACAAGCAAATGGAATGACTTTGGACCATATCTAGTATATAATATTTTTGTCACGCACCTGCTGCATTGCTCTA ACTTACACAGAATGAGAGGAGTAAATGTTCTTGCCTTCAAATAGTGTTTTACGTTTTTTATCCTGCTGAAAAAGTATATATAAAATATCT AACATTACAGGATAGAGGTTCAGTTTCTTAAAAAATTAAAGCTGCTAAAATTGAGTGGTTAAAAAAGATACCTTATCCTATTCCTCCCCA CCCACCCATGTTTTTAAACTAATTTATATAAAATCTGGAGGCTGTTACAGCTAACAAAGCAGGTGTGTGGCAGAAATATTACTTTAAATT TGTCTTGTGAGATTTTACTATATCTCAGACAGCATAAATGCTGTTTTAGCACTGGATTCTTTCACTGAGCACAAAGAGTTGTTGGGGCTT TAGCATCTGACTGATTTTGTTACGGGGTTGATTCTGACCATAGGAAGTATGCAATGTGAATCACTATTTACAGAGAAACCTACAACAGAT GCTTGATGTTGTAGAAACTGGGACATATAGATACCAAGCAAAATTATAAGAAACCTATAAGGTGTTCAATACGCTTGTGTTTCCAAAATT CACTGTACATGATCAGTTTGGTGTTCTTGTACCACAGTTTTTAACTGAAGGAACCAGTTGTAACAGTCTCAATTTTAACTAAAACTTGAA GAACTAAAACAACAATGCAAACCTTTCAGCATTGTTTGGCCAAACTTGTTAAAACTGTAATGCAAGAACCAAATGCACTGTGATGTGGCA CCAACTAATTAGCAAGCATGAATTTTTCACCCAAGAGTGAAAAAAGGAAAATCTACCATGGCTTGAAGTTAAAGAGCAGAACTCCTGACT ACCATTCTATGACTGATCAAAAGACTAATAGTTAAAAACCTCAGCAGGCCTTGTTCACGATATGCAGAAAAAAAAGTGCTGCAGTTTAGA TACCTCTGGAATTTTTCCACAGTGTCACAGGTTTGTAATACTTGAAGCCCTACATTTCTAAGAATATATTTCTTGCTCAGTTGTTTCAGG CAAGCCCAAGACTTTGTAATTTTTAAAGGGCCCAAGATTTTTTTTTTTTTTTTTTTTTTCAAATAACAGACCAGCTTCTTTTTCTTGCAG TTACAGATGTAATTTCCTTTTTGTTGTCAAACATAAGGTACCAAATATGATGCAATAAATTGTTTTGAAAAACAGTTGTGTGAATATTTC AACTAATCTGTGTTGGGCTTCTGTGAAATACACAGGTGGAAACAGAGGTGCAAGCCAGAGGCAATGTAATATGCTGTAAGGCTAGTGCAG ATGGGAGCTTTTTAGAAGGGGCTAAGTGCTGGTGTCAGGGAAATTCCATAATGAAGTAGAATGCTGCTCCTGCATTAAGATTTCATTGAG GGCAAGGCTGGTGGCAGGTACTATGAATGTAATTCATAATTTAAAAGGAAAACTAAAAACTATTTTGATTTGGGAAAATGAGCCTTAATT TGTTAAACCTATACACTGAGAACTAGCCTCAGGCTTAATATTCTCATTGCATTTGCAAGATCTGAGCAAATAAGATTAAGTAAAACAAAT CAATTGTATATATAATTGACCTTTTTGTGGAACATGTAGTTTATAGAAAGTATACTCTAAAGGGAATTTGCCGAAGACCTTTTACTGATT GAACAGTTGTGCTACAATCAACTTTTCATAGTACATGACCTGCATTCCACATCTCAGTCTAACAGTTTAGTAGTGATGTAAAGAGAAGTA CAAACCGAACTCCAGTGCTTTGTTATGTTTTATTAACTGGCCCTGTCTCAGGAACATCTTAACAGATGGCAAAAAAACAAAAACTTTTTT TCAACTCCTATGAGTGGCAACTGAAGTTCTTATTGTTGGGAAAGAACACTAGTCCTACCTCTGCCACTAATGAGGTGTTTGGAGGAGGTA CCAGCCATATAATAGGGGGTGTATGTGTGAATTTTGTTTAAACTCTACTGTATATTGAAATGAAATTCATTTATTTGTCTTGACAATGTT CAAATGATGTAGATTGTCTTAGAATGAATATTCATAAGTACTCAGAACTCTTAAGATGCAGATGCCACCCGTGAGGAGCTAAATTCCTAA TGTGTATTGTATTCCAACCCAATTTTACTGGAACTATTGAATAAATCTTTTATTTTCTTTCAGGTTTACTTGATAGTGGATACATTGGTG TCAGAGGACCTTGACTGGGTTCATTTTATGTCCAGACATCACCCCTGAAACACTGTACTGTACTATCTTGCTCTGAGTAGTATCAACTGG ATCGTCTCATATTTGCCTCATTCATCCTATTAATTTCAAATGATACTGTGGGGGAAAAACAGGGTTAGAAAAACAAGTGGAAAAAATGGA GTGATGTTGTAATCTAAACAAGTGCCTTATGTTTATTGCTAAGAACTGGTGTTACCAACCCTTTTGAGAAGAAAGGGTCTCTTGACCTGT ATTAACATAGGAAAGTAAAGTTCTTTTTGTTTTTCTTTATATTCAGCTACTCTTGTCATTTCTCGTTGAAAAACTAAAATCTGACTAGGT TAGTTTACTCAGCTTTAATTAGATAGTTGAGTCATATATTTTCAACATTTTTCTGTATCGTATTTATTATGCACAAAAATAAAGTGTGAT CTCTAATAGCATGGCTAAAGGTAATGCCAATATTAGTGAATAGCTTTGCTGTGGGCTTTATCAGGCCCTTGTTTTTCACAGTGTTGTTTG TACTCCATGGTGTATTGCTATTAGAGCTGTGAAATGAAAGCTGTGACTTTATGAAGAGATCAAAAAAAGTGTGGTCCAGATTCAGGTAGG TTGTGGTAAGTTCAGGGAAGTCTTGTATGATTTCTAAGAATATTTCAGTTACCATGTATAGTATTTGGGAAAAGCTGTAATGTAAAATAT TGGACTTTGTTGCAAGATAGGTATATACTTGTGTCAGATAATTAAAGCCTTAAATTTTGAAATGAATCTTTGAGATTTCAAAGAAAGACT GACCTTTCAAATAGAAGGCGGTCTTTCTATTCTAGCTAATGCCCCACTTCTTTAAGTTATAAACAAAGTTTCATGATACCATTCTGCTAT CATCTAAACTTTGCTGAACTCTACTGCCAACCTACATTAAAAACAAAGTCCCACGAAATGGCTGTGTTACACCATAGTGAGCAGAAACTT >In-frame_CTSO_ENST00000433477_chr4_156849488_-_NAA15_ENST00000398947_chr4_140305986_+_4728nt AGGCTGGGAGGAGCCGAGGAACCGAAAGAGAAAACAGGCCGCGCGGGCGGCAGAGGAGCCGGGCGCCGCAATGGACGTGCGGGCGCTGCC GTGGCTGCCGTGGCTGCTGTGGCTGCTGTGCCGGGGCGGCGGCGATGCGGACTCCCGCGCCCCCTTCACCCCGACCTGGCCGCGGAGCCG CGAGCGTGAAGCCGCCGCCTTCCGGGAAAGTCTTAATAGACATCGATACTTGAATTCTTTATTTCCCAGTGAAAACTCCACCGCCTTCTA TGGAATAAATCAGTTTTCCTATTTGTTTCCTGAAGAGTTTAAAGCCATTTATTTAAGAAGCAAACCTTCCAAGTTTCCCAGATACTCAGC AGAAGTACATATGTCCATCCCCAATGTGTCTTTGCCGTTAAGATTTGACTGGAGGGACAAGCAGGTTGTGACACAAGTGAGAAACCAGCA GATGTGTGGAGGATGCTGGGCCTTCAGCGTGGTGGGGGCAGTGGAATCTGCTTATGCAATAAAGGGGAAGCCCCTGGAAGACCTAAGTGT CCAGCAGGTCATTGACTGTTCGTATAATAATTATGGCTGCAATGGAGGCTCTACTCTCAATGCTTTGAACTGGTTAAACAAGATGCAAGT AAAACTGGTGAAAGATTCAGAATATCCTTTTAAAGCACAAAATGGTCTGTGCCATTACTTTTCTGGTTCACATTCTGGATTTTCAATCAA AGGTTATTCTGCATATGACTTCAGTGACCAAGAAGATGAAATGGCAAAAGCACTTCTTACCTTTGGCCCTTTGGTAGTCATAGTAGATGC AGTGAGCTGGCAAGATTATCTGGGAGGCATTATACAGCATCACTGCTCTAGTGGAGAAGCAAATCATGCAGTTCTCATAACTGGGTTTGA TAAAACAGGAAGCACTCCATATTGGATTGTGCGGAATTCCTGGGGAAGTTCTTGGGGAGTAGATGGTTATGCCCATGTCAAAATGGGAAG TAATGTTTGTGTGTGTGAAAGTAAAGATTTATCTGATACAGTTAGAACAGTATTAAAACAAGAAATGAATCGTCTTTTTGGAGCAACGAA TCCAAAGAATTTTAATGAAACTTTTCTGAAAAGGAATTCTGATTCATTGCCACACAGATTATCAGCTGCCAAAATGGTATATTACTTAGA TCCTTCTAGTCAGAAGCGAGCTATAGAGTTGGCAACAACACTTGATGAATCTCTCACTAACAGAAACCTCCAGACATGTATGGAGGTATT GGAAGCCTTGTATGATGGTAGCCTAGGAGACTGTAAAGAAGCTGCTGAAATTTATAGAGCAAATTGTCATAAGCTTTTCCCTTATGCTTT GGCTTTCATGCCTCCTGGATATGAAGAGGATATGAAGATCACAGTTAATGGAGATAGTTCTGCAGAAGCTGAAGAACTGGCCAATGAAAT TTGAACATCACTAAACAAGCAAATGGAATGACTTTGGACCATATCTAGTATATAATATTTTTGTCACGCACCTGCTGCATTGCTCTAACT TACACAGAATGAGAGGAGTAAATGTTCTTGCCTTCAAATAGTGTTTTACGTTTTTTATCCTGCTGAAAAAGTATATATAAAATATCTAAC ATTACAGGATAGAGGTTCAGTTTCTTAAAAAATTAAAGCTGCTAAAATTGAGTGGTTAAAAAAGATACCTTATCCTATTCCTCCCCACCC ACCCATGTTTTTAAACTAATTTATATAAAATCTGGAGGCTGTTACAGCTAACAAAGCAGGTGTGTGGCAGAAATATTACTTTAAATTTGT CTTGTGAGATTTTACTATATCTCAGACAGCATAAATGCTGTTTTAGCACTGGATTCTTTCACTGAGCACAAAGAGTTGTTGGGGCTTTAG CATCTGACTGATTTTGTTACGGGGTTGATTCTGACCATAGGAAGTATGCAATGTGAATCACTATTTACAGAGAAACCTACAACAGATGCT TGATGTTGTAGAAACTGGGACATATAGATACCAAGCAAAATTATAAGAAACCTATAAGGTGTTCAATACGCTTGTGTTTCCAAAATTCAC TGTACATGATCAGTTTGGTGTTCTTGTACCACAGTTTTTAACTGAAGGAACCAGTTGTAACAGTCTCAATTTTAACTAAAACTTGAAGAA CTAAAACAACAATGCAAACCTTTCAGCATTGTTTGGCCAAACTTGTTAAAACTGTAATGCAAGAACCAAATGCACTGTGATGTGGCACCA ACTAATTAGCAAGCATGAATTTTTCACCCAAGAGTGAAAAAAGGAAAATCTACCATGGCTTGAAGTTAAAGAGCAGAACTCCTGACTACC ATTCTATGACTGATCAAAAGACTAATAGTTAAAAACCTCAGCAGGCCTTGTTCACGATATGCAGAAAAAAAAGTGCTGCAGTTTAGATAC CTCTGGAATTTTTCCACAGTGTCACAGGTTTGTAATACTTGAAGCCCTACATTTCTAAGAATATATTTCTTGCTCAGTTGTTTCAGGCAA GCCCAAGACTTTGTAATTTTTAAAGGGCCCAAGATTTTTTTTTTTTTTTTTTTTTTCAAATAACAGACCAGCTTCTTTTTCTTGCAGTTA CAGATGTAATTTCCTTTTTGTTGTCAAACATAAGGTACCAAATATGATGCAATAAATTGTTTTGAAAAACAGTTGTGTGAATATTTCAAC TAATCTGTGTTGGGCTTCTGTGAAATACACAGGTGGAAACAGAGGTGCAAGCCAGAGGCAATGTAATATGCTGTAAGGCTAGTGCAGATG GGAGCTTTTTAGAAGGGGCTAAGTGCTGGTGTCAGGGAAATTCCATAATGAAGTAGAATGCTGCTCCTGCATTAAGATTTCATTGAGGGC AAGGCTGGTGGCAGGTACTATGAATGTAATTCATAATTTAAAAGGAAAACTAAAAACTATTTTGATTTGGGAAAATGAGCCTTAATTTGT TAAACCTATACACTGAGAACTAGCCTCAGGCTTAATATTCTCATTGCATTTGCAAGATCTGAGCAAATAAGATTAAGTAAAACAAATCAA TTGTATATATAATTGACCTTTTTGTGGAACATGTAGTTTATAGAAAGTATACTCTAAAGGGAATTTGCCGAAGACCTTTTACTGATTGAA CAGTTGTGCTACAATCAACTTTTCATAGTACATGACCTGCATTCCACATCTCAGTCTAACAGTTTAGTAGTGATGTAAAGAGAAGTACAA ACCGAACTCCAGTGCTTTGTTATGTTTTATTAACTGGCCCTGTCTCAGGAACATCTTAACAGATGGCAAAAAAACAAAAACTTTTTTTCA ACTCCTATGAGTGGCAACTGAAGTTCTTATTGTTGGGAAAGAACACTAGTCCTACCTCTGCCACTAATGAGGTGTTTGGAGGAGGTACCA GCCATATAATAGGGGGTGTATGTGTGAATTTTGTTTAAACTCTACTGTATATTGAAATGAAATTCATTTATTTGTCTTGACAATGTTCAA ATGATGTAGATTGTCTTAGAATGAATATTCATAAGTACTCAGAACTCTTAAGATGCAGATGCCACCCGTGAGGAGCTAAATTCCTAATGT GTATTGTATTCCAACCCAATTTTACTGGAACTATTGAATAAATCTTTTATTTTCTTTCAGGTTTACTTGATAGTGGATACATTGGTGTCA GAGGACCTTGACTGGGTTCATTTTATGTCCAGACATCACCCCTGAAACACTGTACTGTACTATCTTGCTCTGAGTAGTATCAACTGGATC GTCTCATATTTGCCTCATTCATCCTATTAATTTCAAATGATACTGTGGGGGAAAAACAGGGTTAGAAAAACAAGTGGAAAAAATGGAGTG ATGTTGTAATCTAAACAAGTGCCTTATGTTTATTGCTAAGAACTGGTGTTACCAACCCTTTTGAGAAGAAAGGGTCTCTTGACCTGTATT AACATAGGAAAGTAAAGTTCTTTTTGTTTTTCTTTATATTCAGCTACTCTTGTCATTTCTCGTTGAAAAACTAAAATCTGACTAGGTTAG TTTACTCAGCTTTAATTAGATAGTTGAGTCATATATTTTCAACATTTTTCTGTATCGTATTTATTATGCACAAAAATAAAGTGTGATCTC TAATAGCATGGCTAAAGGTAATGCCAATATTAGTGAATAGCTTTGCTGTGGGCTTTATCAGGCCCTTGTTTTTCACAGTGTTGTTTGTAC TCCATGGTGTATTGCTATTAGAGCTGTGAAATGAAAGCTGTGACTTTATGAAGAGATCAAAAAAAGTGTGGTCCAGATTCAGGTAGGTTG TGGTAAGTTCAGGGAAGTCTTGTATGATTTCTAAGAATATTTCAGTTACCATGTATAGTATTTGGGAAAAGCTGTAATGTAAAATATTGG ACTTTGTTGCAAGATAGGTATATACTTGTGTCAGATAATTAAAGCCTTAAATTTTGAAATGAATCTTTGAGATTTCAAAGAAAGACTGAC CTTTCAAATAGAAGGCGGTCTTTCTATTCTAGCTAATGCCCCACTTCTTTAAGTTATAAACAAAGTTTCATGATACCATTCTGCTATCAT CTAAACTTTGCTGAACTCTACTGCCAACCTACATTAAAAACAAAGTCCCACGAAATGGCTGTGTTACACCATAGTGAGCAGAAACTTAAA |
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FusionGenePPI for CTSO_NAA15 |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CTSO | LNX1, LYPLA1, GRN, AMZ2, KNG1 | NAA15 | UBA5, XRCC6, XRCC5, RAD21, SIRT7, NAA10, HYPK, ASUN, MATR3, FN1, VCAM1, ITGA4, DDI2, STAT1, TSNAX, VPS26A, NAA50, PYCARD, MBD5, CYP1A1, CAND2, CMAS, DHX9, DRG1, FBL, HNRNPR, PSMC3, PSMD12, PSMD3, YARS, NAA20, NTRK1, KRAS, CEP97, CNTRL, DCTN1, POC5, STIL, SRPR, RNF126, ZNF746, NAA16, ARRB2, TRAFD1, FGB, SNRNP27, GTF2E2, USP47, MRPS11, FGF9, BRCA1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Tgene | NAA15 | chr4:156849488 | chr4:140305986 | ENST00000296543 | + | 16 | 20 | 500_866 | 718 | 867 | HYPK |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CTSO_NAA15 |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CTSO_NAA15 |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
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