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Fusion gene ID: 8668 |
FusionGeneSummary for CSPG4_MYO1D |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: CSPG4_MYO1D | Fusion gene ID: 8668 | Hgene | Tgene | Gene symbol | CSPG4 | MYO1D | Gene ID | 1464 | 4642 |
| Gene name | chondroitin sulfate proteoglycan 4 | myosin ID | |
| Synonyms | HMW-MAA|MCSP|MCSPG|MEL-CSPG|MSK16|NG2 | PPP1R108|myr4 | |
| Cytomap | 15q24.2 | 17q11.2 | |
| Type of gene | protein-coding | protein-coding | |
| Description | chondroitin sulfate proteoglycan 4chondroitin sulfate proteoglycan 4 (melanoma-associated)chondroitin sulfate proteoglycan NG2melanoma chondroitin sulfate proteoglycanmelanoma-associated chondroitin sulfate proteoglycan | unconventional myosin-Idmyosin-I gammaprotein phosphatase 1, regulatory subunit 108 | |
| Modification date | 20180522 | 20180519 | |
| UniProtAcc | Q6UVK1 | O94832 | |
| Ensembl transtripts involved in fusion gene | ENST00000308508, | ENST00000318217, ENST00000394649, ENST00000579584, ENST00000584232, ENST00000583621, | |
| Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 15 X 9 X 8=1080 |
| # samples | 2 | 15 | |
| ** MAII score | log2(2/8*10)=1.32192809488736 | log2(15/1080*10)=-2.84799690655495 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
| Context | PubMed: CSPG4 [Title/Abstract] AND MYO1D [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | CSPG4 | GO:0035556 | intracellular signal transduction | 10587647 |
| Hgene | CSPG4 | GO:0050731 | positive regulation of peptidyl-tyrosine phosphorylation | 10587647 |
| Tgene | MYO1D | GO:0010923 | negative regulation of phosphatase activity | 19389623 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | SARC | TCGA-FX-A3TO-01A | CSPG4 | chr15 | 76005009 | - | MYO1D | chr17 | 31082680 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| In-frame | ENST00000308508 | ENST00000318217 | CSPG4 | chr15 | 76005009 | - | MYO1D | chr17 | 31082680 | - |
| In-frame | ENST00000308508 | ENST00000394649 | CSPG4 | chr15 | 76005009 | - | MYO1D | chr17 | 31082680 | - |
| In-frame | ENST00000308508 | ENST00000579584 | CSPG4 | chr15 | 76005009 | - | MYO1D | chr17 | 31082680 | - |
| 5CDS-5UTR | ENST00000308508 | ENST00000584232 | CSPG4 | chr15 | 76005009 | - | MYO1D | chr17 | 31082680 | - |
| 5CDS-intron | ENST00000308508 | ENST00000583621 | CSPG4 | chr15 | 76005009 | - | MYO1D | chr17 | 31082680 | - |
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FusionProtFeatures for CSPG4_MYO1D |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| CSPG4 | MYO1D |
| Proteoglycan playing a role in cell proliferation andmigration which stimulates endothelial cells motility duringmicrovascular morphogenesis. May also inhibit neurite outgrowthand growth cone collapse during axon regeneration. Cell surfacereceptor for collagen alpha 2(VI) which may confer cells abilityto migrate on that substrate. Binds through its extracellular N-terminus growth factors, extracellular matrix proteases modulatingtheir activity. May regulate MPP16-dependent degradation andinvasion of type I collagen participating in melanoma cellsinvasion properties. May modulate the plasminogen system byenhancing plasminogen activation and inhibiting angiostatin.Functions also as a signal transducing protein by binding throughits cytoplasmic C-terminus scaffolding and signaling proteins. Maypromote retraction fiber formation and cell polarization throughRho GTPase activation. May stimulate alpha-4, beta-1 integrin-mediated adhesion and spreading by recruiting and activating asignaling cascade through CDC42, ACK1 and BCAR1. May activate FAKand ERK1/ERK2 signaling cascades. {ECO:0000269|PubMed:10587647,ECO:0000269|PubMed:11278606, ECO:0000269|PubMed:15210734}. | Myosins are actin-based motor molecules with ATPaseactivity. Unconventional myosins serve in intracellular movements.Their highly divergent tails are presumed to bind to membranouscompartments, which would be moved relative to actin filaments (Bysimilarity). {ECO:0000250}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Tgene | >MYO1D | chr15:76005009 | chr17:31082680 | ENST00000318217 | - | 9 | 22 | 699_719 | 432 | 1007 | Domain | IQ 1 |
| Tgene | >MYO1D | chr15:76005009 | chr17:31082680 | ENST00000318217 | - | 9 | 22 | 721_741 | 432 | 1007 | Domain | IQ 2 |
| Tgene | >MYO1D | chr15:76005009 | chr17:31082680 | ENST00000318217 | - | 9 | 22 | 812_1005 | 432 | 1007 | Domain | TH1 |
| Tgene | >MYO1D | chr15:76005009 | chr17:31082680 | ENST00000318217 | - | 9 | 22 | 572_594 | 432 | 1007 | Region | Actin-binding |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 639_1586 | 29 | 2323 | Compositional bias | Note=Gly/Ser-rich (glycosaminoglycan attachment domain) |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 202_380 | 29 | 2323 | Domain | Laminin G-like 2 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 30_192 | 29 | 2323 | Domain | Laminin G-like 1 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 2320_2322 | 29 | 2323 | Motif | Note=PDZ-binding |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1586_2221 | 29 | 2323 | Region | Neurite growth inhibition |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1587_2221 | 29 | 2323 | Region | Note=Cysteine-containing |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 30_639 | 29 | 2323 | Region | Neurite growth inhibition |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1018_1110 | 29 | 2323 | Repeat | CSPG 6 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1126_1216 | 29 | 2323 | Repeat | CSPG 7 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1238_1337 | 29 | 2323 | Repeat | CSPG 8 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1356_1449 | 29 | 2323 | Repeat | CSPG 9 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1473_1563 | 29 | 2323 | Repeat | CSPG 10 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1581_1679 | 29 | 2323 | Repeat | CSPG 11 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1704_1803 | 29 | 2323 | Repeat | CSPG 12 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1832_1924 | 29 | 2323 | Repeat | CSPG 13 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 1941_2029 | 29 | 2323 | Repeat | CSPG 14 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 2038_2147 | 29 | 2323 | Repeat | CSPG 15 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 428_523 | 29 | 2323 | Repeat | CSPG 1 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 553_645 | 29 | 2323 | Repeat | CSPG 2 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 662_764 | 29 | 2323 | Repeat | CSPG 3 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 783_878 | 29 | 2323 | Repeat | CSPG 4 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 898_989 | 29 | 2323 | Repeat | CSPG 5 |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 2246_2322 | 29 | 2323 | Topological domain | Cytoplasmic |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 30_2224 | 29 | 2323 | Topological domain | Extracellular |
| Hgene | >CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 2225_2245 | 29 | 2323 | Transmembrane | Helical |
| Tgene | MYO1D | chr15:76005009 | chr17:31082680 | ENST00000318217 | - | 9 | 22 | 9_695 | 432 | 1007 | Domain | Myosin motor |
| Tgene | MYO1D | chr15:76005009 | chr17:31082680 | ENST00000318217 | - | 9 | 22 | 102_109 | 432 | 1007 | Nucleotide binding | ATP |
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FusionGeneSequence for CSPG4_MYO1D |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000318217_chr17_31082680_-_604aa MQSGPRPPLPAPGLALALTLTMLARLASADXLLQQSDHCXPRGATAQRDHCNPXXCLHECRQSHRXNVSXSTXQXIGQTRPFFQPKALCL RQNSGVXSRFSNSTLCRRCSLFCHWFYXQKXRYFISRFQAPYVXQFKSCAQEYVAXRQTEHYRGDQATSDCCYLVXEFYDCSSRQPCIKG TILRSLHQTQXQEISTDIXXXTLPAPSRISWTTGKCESASGRICLPPDIREVSSQVXDDLXIHLAQPXPSFRQRGCQETNXTVWFSGXCS LWEDQNFHSNTPNIVYLGRTPCPDAHKDCPLSTKGVAGHPGPHAVQKNQGSSDNNQVLPALQSEVVHPRGGQTLPWRQDHARLREAREVA KPSXSSSPFXGGPADDFQXMESIPAHQEHSGLRPAPGQGKGCSRGNVEGSKGXPRAPEGLGGQLSCFKARYTSDLRHFCPCCXXIETEGQ IHECPLFLSRPXGKSIXXGGRQSNFCHXPSPVXNGSHXTVQGDEDYPSIQFDWSECLQWKGPTCSVPYERQQRPHCLPLQQTANPXESNW >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000394649_chr17_31082680_-_604aa MQSGPRPPLPAPGLALALTLTMLARLASADXLLQQSDHCXPRGATAQRDHCNPXXCLHECRQSHRXNVSXSTXQXIGQTRPFFQPKALCL RQNSGVXSRFSNSTLCRRCSLFCHWFYXQKXRYFISRFQAPYVXQFKSCAQEYVAXRQTEHYRGDQATSDCCYLVXEFYDCSSRQPCIKG TILRSLHQTQXQEISTDIXXXTLPAPSRISWTTGKCESASGRICLPPDIREVSSQVXDDLXIHLAQPXPSFRQRGCQETNXTVWFSGXCS LWEDQNFHSNTPNIVYLGRTPCPDAHKDCPLSTKGVAGHPGPHAVQKNQGSSDNNQVLPALQSEVVHPRGGQTLPWRQDHARLREAREVA KPSXSSSPFXGGPADDFQXMESIPAHQEHSGLRPAPGQGKGCSRGNVEGSKGXPRAPEGLGGQLSCFKARYTSDLRHFCPCCXXIETEGQ IHECPLFLSRPXGKSIXXGGRQSNFCHXPSPVXNGSHXTVQGDEDYPSIQFDWSECLQWKGPTCSVPYERQQRPHCLPLQQTANPXESNW >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000579584_chr17_31082680_-_559aa MQSGPRPPLPAPGLALALTLTMLARLASADXLLQQSDHCXPRGATAQRDHCNPXXCLHECRQSHRXNVSXSTXQXIGQTRPFFQPKALCL RQNSGVXSRFSNSTLCRRCSLFCHWFYXQKXRYFISRFQAPYVXQFKSCAQEYVAXRQTEHYRGDQATSDCCYLVXEFYDCSSRQPCIKG TILRSLHQTQXQEISTDIXXXTLPAPSRISWTTGKCESASGRICLPPDIREVSSQVXDDLXIHLAQPXPSFRQRGCQETNXTVWFSGXCS LWEDQNFHSNTPNIVYLGRTPCPDAHKDCPLSTKGVAGHPGPHAVQKNQGSSDNNQVLPALQSEVVHPRGGQTLPWRQDHARLREAREVA KPSXSSSPFXGGPADDFQXMESIPAHQEHSGLRPAPGQGKGCSRGNVEGSKGXPRAPEGLGGQLSCFKARYTSDLRHFCPCCXXIETEGQ IHECPLFLSRPXGKSIXXGGRQSNFCHXPSPVXNGSHXTVQGDEDYPSIQFDWSECLQWKGPTCSVPYERQQRPHCLPLQQTANPXESNW |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000318217_chr17_31082680_-_1813nt ATGCAGTCCGGGCCGCGGCCCCCACTTCCAGCCCCCGGCCTGGCCTTGGCTTTGACCCTGACTATGTTGGCCAGACTTGCATCCGCGGAT TGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAATGT CGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAGCTCTGTGCCTC AGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGTCTATTCTGTCATTGGTTTTATTGACAAAAA TAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGTTCAAATCCTGTGCTCAAGAATATGTGGCCTGAAGGCAAACTGAG CATTACAGAGGTGACCAAGCGACCTCTGACTGCTGCTACCTTGTTTAAGAATTCTATGATTGCTCTAGTAGACAACCTTGCATCAAAGGA ACCATATTACGTTCGTTGCATCAAACCCAATGACAAGAAATCTCCACAGATATTTGATGATGAACGCTGCCGGCACCAAGTAGAATATCT TGGACTACTGGAAAATGTGAGAGTGCGTCGGGCAGGATTTGCCTTCCGCCAGACATACGAGAAGTTTCTTCACAGGTATAAGATGATCTC TGAATTCACCTGGCCCAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTAATTGAACGGTGTGGTTTTCAGGATGATGTAGC TTATGGGAAGACCAAAATTTTCATTCGAACACCCCGAACATTGTTTACCTTGGAAGAACTCCGTGCCCAGATGCTCATAAGGATTGTCCT CTTTCTACAAAAGGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCGGCG CTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTGGCC AAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCATTCC GGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGCCTG GGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGACAA ATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCGTCA CCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGGAAA GGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGG AGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCTGCA CGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAGCGT >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000394649_chr17_31082680_-_1813nt ATGCAGTCCGGGCCGCGGCCCCCACTTCCAGCCCCCGGCCTGGCCTTGGCTTTGACCCTGACTATGTTGGCCAGACTTGCATCCGCGGAT TGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAATGT CGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAGCTCTGTGCCTC AGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGTCTATTCTGTCATTGGTTTTATTGACAAAAA TAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGTTCAAATCCTGTGCTCAAGAATATGTGGCCTGAAGGCAAACTGAG CATTACAGAGGTGACCAAGCGACCTCTGACTGCTGCTACCTTGTTTAAGAATTCTATGATTGCTCTAGTAGACAACCTTGCATCAAAGGA ACCATATTACGTTCGTTGCATCAAACCCAATGACAAGAAATCTCCACAGATATTTGATGATGAACGCTGCCGGCACCAAGTAGAATATCT TGGACTACTGGAAAATGTGAGAGTGCGTCGGGCAGGATTTGCCTTCCGCCAGACATACGAGAAGTTTCTTCACAGGTATAAGATGATCTC TGAATTCACCTGGCCCAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTAATTGAACGGTGTGGTTTTCAGGATGATGTAGC TTATGGGAAGACCAAAATTTTCATTCGAACACCCCGAACATTGTTTACCTTGGAAGAACTCCGTGCCCAGATGCTCATAAGGATTGTCCT CTTTCTACAAAAGGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCGGCG CTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTGGCC AAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCATTCC GGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGCCTG GGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGACAA ATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCGTCA CCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGGAAA GGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGG AGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCTGCA CGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAGCGT >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000579584_chr17_31082680_-_1678nt ATGCAGTCCGGGCCGCGGCCCCCACTTCCAGCCCCCGGCCTGGCCTTGGCTTTGACCCTGACTATGTTGGCCAGACTTGCATCCGCGGAT TGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAATGT CGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAGCTCTGTGCCTC AGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGTCTATTCTGTCATTGGTTTTATTGACAAAAA TAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGTTCAAATCCTGTGCTCAAGAATATGTGGCCTGAAGGCAAACTGAG CATTACAGAGGTGACCAAGCGACCTCTGACTGCTGCTACCTTGTTTAAGAATTCTATGATTGCTCTAGTAGACAACCTTGCATCAAAGGA ACCATATTACGTTCGTTGCATCAAACCCAATGACAAGAAATCTCCACAGATATTTGATGATGAACGCTGCCGGCACCAAGTAGAATATCT TGGACTACTGGAAAATGTGAGAGTGCGTCGGGCAGGATTTGCCTTCCGCCAGACATACGAGAAGTTTCTTCACAGGTATAAGATGATCTC TGAATTCACCTGGCCCAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTAATTGAACGGTGTGGTTTTCAGGATGATGTAGC TTATGGGAAGACCAAAATTTTCATTCGAACACCCCGAACATTGTTTACCTTGGAAGAACTCCGTGCCCAGATGCTCATAAGGATTGTCCT CTTTCTACAAAAGGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCGGCG CTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTGGCC AAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCATTCC GGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGCCTG GGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGACAA ATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCGTCA CCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGGAAA GGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAATTGG |
| * Fusion transcript sequences (Full-length transcript). |
| >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000318217_chr17_31082680_-_4143nt GCGCCCAGGAGCAGAGCCGCGCTCGCTCCACTCAGCTCCCAGCTCCCAGGACTCCGCTGGCTCCTCGCAAGTCCTGCCGCCCAGCCCGCC GGGATGCAGTCCGGGCCGCGGCCCCCACTTCCAGCCCCCGGCCTGGCCTTGGCTTTGACCCTGACTATGTTGGCCAGACTTGCATCCGCG GATTGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAA TGTCGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAGCTCTGTGC CTCAGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGTCTATTCTGTCATTGGTTTTATTGACAA AAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGTTCAAATCCTGTGCTCAAGAATATGTGGCCTGAAGGCAAACT GAGCATTACAGAGGTGACCAAGCGACCTCTGACTGCTGCTACCTTGTTTAAGAATTCTATGATTGCTCTAGTAGACAACCTTGCATCAAA GGAACCATATTACGTTCGTTGCATCAAACCCAATGACAAGAAATCTCCACAGATATTTGATGATGAACGCTGCCGGCACCAAGTAGAATA TCTTGGACTACTGGAAAATGTGAGAGTGCGTCGGGCAGGATTTGCCTTCCGCCAGACATACGAGAAGTTTCTTCACAGGTATAAGATGAT CTCTGAATTCACCTGGCCCAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTAATTGAACGGTGTGGTTTTCAGGATGATGT AGCTTATGGGAAGACCAAAATTTTCATTCGAACACCCCGAACATTGTTTACCTTGGAAGAACTCCGTGCCCAGATGCTCATAAGGATTGT CCTCTTTCTACAAAAGGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCG GCGCTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTG GCCAAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCAT TCCGGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGC CTGGGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGA CAAATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCG TCACCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGG AAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAAT TGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCT GCACGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAG CGTGCCCGGGAACTGACGCCCCGCGGAGGCCTGGCCCGGAGCCCGGCCACACTCCGAGTCCTGGGTCCCAGTCCAGCTGCTGCCTCCCAA CCCATGCCCGCTAGAAACCTGCTGCGAGGGCCCCTCCCAGAGGAGCCCCGCCCCTGTAAGATTTCCTTCCTGGTTTTCTGCCTTTGGTAT CATCTTCCTCTGTCCTTACTGTCCACGGTCCCTGTTCAATAAGCCAAAGACCCTGGTGCCCCGCCCAGACCCCTGGGCTGACGTCCAGAC CAATCTCACCCCAGAGGCAACTGGATGGTGCCTTTAGTTGGTGCGGATGCCCCGTGGCCAGGTCAAGTCAGAGCACCTGGACAGGTGTCC TCCCTGCTGCTGACCCTGCAGAGGGAAGGGGTGGGGATGCAGGACCCCACTCTGCGGGAGCCCCATAGCCACCTCTCTTGCCCAAGGTGA GCCAGCCCTGGGGACCCAGCTCAGGGAGGCTCTGCTCAGAGTTCGGCGGACCCACCCCAACCCAACTCCCAGCCGCCAGCCAAAGCCACT GGGTGAGCAGAGTCACCCACAGGGCCAGCCCCTCAGCCAGGAGCCAGTGGCAGGAGCGGAACAGCCCATCCAGCAGAGTGAGTCCATCCT TCCCAGGTTCTCCCCTGGGAGACTCCCTTTGCCACCAAGGCCCCCACCAGGGCCTCTGACCACCGCTCTGGAGAGGACAGTGTGGCATGC TCCAAGGATCATCTTACTTAACTCGCAGCCTGTGGCTGTGGTCCTCTTATAGATACTTTCACCGTTTGCAGGGTTGCTAATCAGATACCT GCTGTCACCACACTTGGGTCAGGAACCCTAATGAGAACGGGGAGCTGCCAGGGTGAGGGCAGCCCTCAGGGTCGGCCGCTTTCCCTCTGG ACCACCTCCCGCTGCGTTTCCTACTCAGAGAAACAGCAAGGGCGGGGTCAAGACACGGGATGACGGGAAGCAGGAAGCGGGGCAGCAGCA CAGCGTGGGGTCCTGGCACTGCAGGCCAGGCCAGGATGCCCACCCCGCCCTCTACACGGCCCCTTGGGGCCTGCGCCCGTGAAACTGGTG CCAGGGAGCACTGCCAGCTTGCCAGTTTCTGCCCAGCAAAAGCACGTATGCTTCAGGGGCCTTCTGAGACCACCTTCCCCACTGAGCCCC AGCTGCTGAGAAGGCCTTGAGGGAAGTAGAGGCTGGGAGCAAATGCCCCATGCGGTGAGAGGATGAGGGGAGCCTACGCCTCAGGCATGT GGTGAGAGGATGAGGGGGAGGGAGCCAACGCCTCAGGTGGAGTGGGCAGAGGTGCAAGAGAGGGATGTACTGAAGCTTCTTCCCGTCCTG CCACAGACACTTCTCCTGCCTTCCCACCCTGACCCGGCAGAACCCACCAAGTGCCTGTGTGCAGCCTCCTGTGCCTCACCCAGGGCCTGA CCCCAGAGTGGTCCCAACAACCCGGTCTCATGCCCACTCCCCATCCCTGCTTCCCAAAAATTGCACTGTGTGCAGTTTGCAACAAAGAAT CCCGCTGGCATCCTGTCCTTGGGAACCCTTTCTCATTCTCCAAGCCTGGTCAGCTGCCTGCACAGGCAGAGGTGCCCTCAGCCCAGATTA GCAACACTCATAGTTTTGCCAATTACCAGTAGACACTAGTGGAACCATCTAACTGGAACTTCCTCTCTCCTTCCACTTATTTCCTCAAAC TTGTTGCTTTACACTAGACACATGCAAATGTATGTTTTAAACACACCAAAACAGATCATGCCAAATGAGTTGCCTGTCAAAGGCTGGAGG GCAGGAGGAGGGCCTGGGTTTGGGTTCTTTCCTCCCAGCCTTTGGATGGTGCCTTGGGCCCCTTAGCCCCAGCGCCAGGGCCTCCCAGCT GAGGCCACAGGACAAGCACTTTTTTATGATGTACTAAAAGCCACAGTATGTGGCAACTGCAAAAGGATCAGGAATTTAGGGTATGATCTC GGTCACGTGTCCCGGGCGCTGAGGGGAAAGGAAGCGGGCATGATTGTAGACAATGAGGGGGTTCTCTTGATGTAATGAAATGCAATTTTA TGGTTTGGTGCAAAAACTCCTATTTTCCAGTAAATTAACTTTATTTCTAAAGCATATTTTGATTTGCCATCAAGAGCAATAAAGCATTAA ATCTTATTTTTAAAGGTGTTCTGCTTATCTGTCACTGAAAACTTGGTGAAATTTTTGCTTAAATAAAGTCAACCATTATCTGGGAGGATA >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000394649_chr17_31082680_-_4056nt GCGCCCAGGAGCAGAGCCGCGCTCGCTCCACTCAGCTCCCAGCTCCCAGGACTCCGCTGGCTCCTCGCAAGTCCTGCCGCCCAGCCCGCC GGGATGCAGTCCGGGCCGCGGCCCCCACTTCCAGCCCCCGGCCTGGCCTTGGCTTTGACCCTGACTATGTTGGCCAGACTTGCATCCGCG GATTGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAA TGTCGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAGCTCTGTGC CTCAGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGTCTATTCTGTCATTGGTTTTATTGACAA AAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGTTCAAATCCTGTGCTCAAGAATATGTGGCCTGAAGGCAAACT GAGCATTACAGAGGTGACCAAGCGACCTCTGACTGCTGCTACCTTGTTTAAGAATTCTATGATTGCTCTAGTAGACAACCTTGCATCAAA GGAACCATATTACGTTCGTTGCATCAAACCCAATGACAAGAAATCTCCACAGATATTTGATGATGAACGCTGCCGGCACCAAGTAGAATA TCTTGGACTACTGGAAAATGTGAGAGTGCGTCGGGCAGGATTTGCCTTCCGCCAGACATACGAGAAGTTTCTTCACAGGTATAAGATGAT CTCTGAATTCACCTGGCCCAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTAATTGAACGGTGTGGTTTTCAGGATGATGT AGCTTATGGGAAGACCAAAATTTTCATTCGAACACCCCGAACATTGTTTACCTTGGAAGAACTCCGTGCCCAGATGCTCATAAGGATTGT CCTCTTTCTACAAAAGGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCG GCGCTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTG GCCAAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCAT TCCGGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGC CTGGGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGA CAAATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCG TCACCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGG AAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAAT TGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAGTGAGAAGCGCCACCTTCAAGTGAACGTCACCAACCCAGTACAGTGCAGCCT GCACGGGAAGAAGTGCACCGTCTCCGTGGAGACGCGGCTCAACCAGCCCCAGCCCGACTTCACCAAGAATCGCTCGGGCTTCATCCTCAG CGTGCCCGGGAACTGACGCCCCGCGGAGGCCTGGCCCGGAGCCCGGCCACACTCCGAGTCCTGGGTCCCAGTCCAGCTGCTGCCTCCCAA CCCATGCCCGCTAGAAACCTGCTGCGAGGGCCCCTCCCAGAGGAGCCCCGCCCCTGTAAGATTTCCTTCCTGGTTTTCTGCCTTTGGTAT CATCTTCCTCTGTCCTTACTGTCCACGGTCCCTGTTCAATAAGCCAAAGACCCTGGTGCCCCGCCCAGACCCCTGGGCTGACGTCCAGAC CAATCTCACCCCAGAGGCAACTGGATGGTGCCTTTAGTTGGTGCGGATGCCCCGTGGCCAGGTCAAGTCAGAGCACCTGGACAGGTGTCC TCCCTGCTGCTGACCCTGCAGAGGGAAGGGGTGGGGATGCAGGACCCCACTCTGCGGGAGCCCCATAGCCACCTCTCTTGCCCAAGGTGA GCCAGCCCTGGGGACCCAGCTCAGGGAGGCTCTGCTCAGAGTTCGGCGGACCCACCCCAACCCAACTCCCAGCCGCCAGCCAAAGCCACT GGGTGAGCAGAGTCACCCACAGGGCCAGCCCCTCAGCCAGGAGCCAGTGGCAGGAGCGGAACAGCCCATCCAGCAGAGTGAGTCCATCCT TCCCAGGTTCTCCCCTGGGAGACTCCCTTTGCCACCAAGGCCCCCACCAGGGCCTCTGACCACCGCTCTGGAGAGGACAGTGTGGCATGC TCCAAGGATCATCTTACTTAACTCGCAGCCTGTGGCTGTGGTCCTCTTATAGATACTTTCACCGTTTGCAGGGTTGCTAATCAGATACCT GCTGTCACCACACTTGGGTCAGGAACCCTAATGAGAACGGGGAGCTGCCAGGGTGAGGGCAGCCCTCAGGGTCGGCCGCTTTCCCTCTGG ACCACCTCCCGCTGCGTTTCCTACTCAGAGAAACAGCAAGGGCGGGGTCAAGACACGGGATGACGGGAAGCAGGAAGCGGGGCAGCAGCA CAGCGTGGGGTCCTGGCACTGCAGGCCAGGCCAGGATGCCCACCCCGCCCTCTACACGGCCCCTTGGGGCCTGCGCCCGTGAAACTGGTG CCAGGGAGCACTGCCAGCTTGCCAGTTTCTGCCCAGCAAAAGCACGTATGCTTCAGGGGCCTTCTGAGACCACCTTCCCCACTGAGCCCC AGCTGCTGAGAAGGCCTTGAGGGAAGTAGAGGCTGGGAGCAAATGCCCCATGCGGTGAGAGGATGAGGGGAGCCTACGCCTCAGGCATGT GGTGAGAGGATGAGGGGGAGGGAGCCAACGCCTCAGGTGGAGTGGGCAGAGGTGCAAGAGAGGGATGTACTGAAGCTTCTTCCCGTCCTG CCACAGACACTTCTCCTGCCTTCCCACCCTGACCCGGCAGAACCCACCAAGTGCCTGTGTGCAGCCTCCTGTGCCTCACCCAGGGCCTGA CCCCAGAGTGGTCCCAACAACCCGGTCTCATGCCCACTCCCCATCCCTGCTTCCCAAAAATTGCACTGTGTGCAGTTTGCAACAAAGAAT CCCGCTGGCATCCTGTCCTTGGGAACCCTTTCTCATTCTCCAAGCCTGGTCAGCTGCCTGCACAGGCAGAGGTGCCCTCAGCCCAGATTA GCAACACTCATAGTTTTGCCAATTACCAGTAGACACTAGTGGAACCATCTAACTGGAACTTCCTCTCTCCTTCCACTTATTTCCTCAAAC TTGTTGCTTTACACTAGACACATGCAAATGTATGTTTTAAACACACCAAAACAGATCATGCCAAATGAGTTGCCTGTCAAAGGCTGGAGG GCAGGAGGAGGGCCTGGGTTTGGGTTCTTTCCTCCCAGCCTTTGGATGGTGCCTTGGGCCCCTTAGCCCCAGCGCCAGGGCCTCCCAGCT GAGGCCACAGGACAAGCACTTTTTTATGATGTACTAAAAGCCACAGTATGTGGCAACTGCAAAAGGATCAGGAATTTAGGGTATGATCTC GGTCACGTGTCCCGGGCGCTGAGGGGAAAGGAAGCGGGCATGATTGTAGACAATGAGGGGGTTCTCTTGATGTAATGAAATGCAATTTTA TGGTTTGGTGCAAAAACTCCTATTTTCCAGTAAATTAACTTTATTTCTAAAGCATATTTTGATTTGCCATCAAGAGCAATAAAGCATTAA >In-frame_CSPG4_ENST00000308508_chr15_76005009_-_MYO1D_ENST00000579584_chr17_31082680_-_2113nt GCGCCCAGGAGCAGAGCCGCGCTCGCTCCACTCAGCTCCCAGCTCCCAGGACTCCGCTGGCTCCTCGCAAGTCCTGCCGCCCAGCCCGCC GGGATGCAGTCCGGGCCGCGGCCCCCACTTCCAGCCCCCGGCCTGGCCTTGGCTTTGACCCTGACTATGTTGGCCAGACTTGCATCCGCG GATTGACTACTTCAACAATCAGATCATTGTTGACCTCGTGGAGCAACAGCACAAAGGGATCATTGCAATCCTTGATGATGCTTGCATGAA TGTCGGCAAAGTCACCGATGAAATGTTTCTTGAAGCACTTAACAGTAAATTGGGCAAACACGCCCATTTTTCCAGCCGAAAGCTCTGTGC CTCAGACAAAATTCTGGAGTTTGATCGAGATTTTCGAATTCGACATTATGCAGGCGATGTAGTCTATTCTGTCATTGGTTTTATTGACAA AAATAAAGATACTTTATTTCAAGATTTCAAGCGCCTTATGTATAACAGTTCAAATCCTGTGCTCAAGAATATGTGGCCTGAAGGCAAACT GAGCATTACAGAGGTGACCAAGCGACCTCTGACTGCTGCTACCTTGTTTAAGAATTCTATGATTGCTCTAGTAGACAACCTTGCATCAAA GGAACCATATTACGTTCGTTGCATCAAACCCAATGACAAGAAATCTCCACAGATATTTGATGATGAACGCTGCCGGCACCAAGTAGAATA TCTTGGACTACTGGAAAATGTGAGAGTGCGTCGGGCAGGATTTGCCTTCCGCCAGACATACGAGAAGTTTCTTCACAGGTATAAGATGAT CTCTGAATTCACCTGGCCCAACCATGACCTTCCTTCAGACAAAGAGGCTGTCAAGAAACTAATTGAACGGTGTGGTTTTCAGGATGATGT AGCTTATGGGAAGACCAAAATTTTCATTCGAACACCCCGAACATTGTTTACCTTGGAAGAACTCCGTGCCCAGATGCTCATAAGGATTGT CCTCTTTCTACAAAAGGTGTGGCGGGGCACCCTGGCCCGCATGCGGTACAAAAGAACCAAGGCAGCTCTGACAATAATCAGGTACTACCG GCGCTACAAAGTGAAGTCGTACATCCACGAGGTGGCCAGACGCTTCCATGGCGTCAAGACCATGCGAGACTACGGGAAGCACGTGAAGTG GCCAAGCCCTCCTAAAGTTCTTCGCCGTTTTGAGGAGGCCCTGCAGACGATTTTCAATAGATGGAGAGCATCCCAGCTCATCAAGAGCAT TCCGGCCTCAGACCTGCCCCAGGTCAGGGCAAAGGTTGCAGCCGTGGAAATGTTGAAGGGTCAAAGGGCTGACCTCGGGCTCCAGAGGGC CTGGGAGGGCAACTATCTTGCTTCAAAGCCAGATACACCTCAGACCTCAGGCACTTTTGTCCCTGTTGCTAATGAATTGAAACGGAAGGA CAAATACATGAATGTCCTCTTTTCCTGTCACGTCCGTAAGGTAAATCGATTTAGTAAGGTGGAAGACAGAGCAATTTTTGTCACTGACCG TCACCTGTATAAAATGGATCCCACTAAACAGTACAAGGTGATGAAGACTATCCCTCTATACAATTTGACTGGTCTGAGTGTCTCCAATGG AAAGGACCAACTTGTAGTGTTCCATACGAAAGACAACAAAGACCTCATTGTCTGCCTCTTCAGCAAACAGCCAACCCATGAGAGTCGAAT TGGAGAACTTGTTGGAGTGCTGGTGAATCATTTCAAGAGAAACCATCTGCTTATACTCTGAATAAAATTCAAGAAAGCATAGATTCTACA TAAACAGGCCCAAGATTACATGGCAAACTGAGATGAAGAGGATGCTGGCTGAGAAACAAACAAAAGTGTTCAATTATTTGAATGAAGTAA GGAAAGATATTTTAAAATGTAAATCAACATTAAAATCTGAAAATGGCACAGTTGATATTGCAGAAAATAGAATTGATGTGAAAGGAAAGT TTGAAGTCTCTCAGTGTGCAGAATTTACTGTTATAATGGGCAACATGTTAACTTTCTTAGCAATATACAAAATAAGGGTACATCTTACAG |
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FusionGenePPI for CSPG4_MYO1D |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| CSPG4 | GRIP2, CDC42, GRIP1, CAPNS1, LGALS3, LGALS8, LGALS9, PCBP4, SORT1, ZNF644 | MYO1D | ILK, PELO, SIRT7, FBXO25, CUL1, LRRK2, UBASH3B, SHC1, ATP6V1B1, ECT2, MDC1, PAXIP1, PAN2, CCDC8, EGFR, DAPK1, PEX19, VSIG4, UBB, TBC1D9B, PTEN, ZNF746, SSH1, SSH2, PSMC4, DKK3, FBXO40, TOR1AIP2, BTD, HAVCR2, EID1, NEXN, SCN3B, SSSCA1, CDH5, DNAI2, PPP6R2, LSP1, BBS7, COX15, DLST, PDHA1 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| Hgene | CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 631_1446 | 29 | 2323 | COL5A1 |
| Hgene | CSPG4 | chr15:76005009 | chr17:31082680 | ENST00000308508 | - | 1 | 10 | 574_1040 | 29 | 2323 | COL6A2 |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CSPG4_MYO1D |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CSPG4_MYO1D |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Tgene | MYO1D | C0004352 | Autistic Disorder | 1 | CTD_human |
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