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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 8659

FusionGeneSummary for CSNK1G2_PDE5A

check button Fusion gene summary
Fusion gene informationFusion gene name: CSNK1G2_PDE5A
Fusion gene ID: 8659
HgeneTgene
Gene symbol

CSNK1G2

PDE5A

Gene ID

1455

8654

Gene namecasein kinase 1 gamma 2phosphodiesterase 5A
SynonymsCK1g2CGB-PDE|CN5A|PDE5
Cytomap

19p13.3

4q26

Type of geneprotein-codingprotein-coding
Descriptioncasein kinase I isoform gamma-2casein kinase ICKI-gamma 2casein kinase 1 isoform gamma-2cGMP-specific 3',5'-cyclic phosphodiesterasecGMP-binding cGMP-specific 3',5'-cyclic nucleotide phosphodiesterasecGMP-specific phosphodiesterase PDE5A2cGMP-specific phosphodiesterase type 5Aphosphodiesterase 5A, cGMP-specificphosphodiesterase isozyme
Modification date2018052320180519
UniProtAcc

P78368

O76074

Ensembl transtripts involved in fusion geneENST00000255641, ENST00000587123, 
ENST00000354960, ENST00000394439, 
ENST00000264805, ENST00000512739, 
Fusion gene scores* DoF score4 X 4 X 2=322 X 2 X 2=8
# samples 42
** MAII scorelog2(4/32*10)=0.321928094887362
effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs).
DoF>8 and MAII>0
log2(2/8*10)=1.32192809488736
Context

PubMed: CSNK1G2 [Title/Abstract] AND PDE5A [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCSNK1G2

GO:0018105

peptidyl-serine phosphorylation

25500533

TgenePDE5A

GO:0046069

cGMP catabolic process

14687666


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
TCGARVSARCTCGA-DX-A3U5-01ACSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
Frame-shiftENST00000255641ENST00000354960CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
5CDS-5UTRENST00000255641ENST00000394439CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
5CDS-5UTRENST00000255641ENST00000264805CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
5CDS-intronENST00000255641ENST00000512739CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
intron-3CDSENST00000587123ENST00000354960CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
intron-5UTRENST00000587123ENST00000394439CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
intron-5UTRENST00000587123ENST00000264805CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-
intron-intronENST00000587123ENST00000512739CSNK1G2chr19

1969958

+PDE5Achr4

120528452

-

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FusionProtFeatures for CSNK1G2_PDE5A


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CSNK1G2

P78368

PDE5A

O76074

Serine/threonine-protein kinase. Casein kinases areoperationally defined by their preferential utilization of acidicproteins such as caseins as substrates. It can phosphorylate alarge number of proteins. Participates in Wnt signaling.Phosphorylates COL4A3BP/CERT, MTA1 and SMAD3. Involved in braindevelopment and vesicular trafficking and neurotransmitterreleasing from small synaptic vesicles. Regulates fast synaptictransmission mediated by glutamate. SMAD3 phosphorylation promotesits ligand-dependent ubiquitination and subsequent proteasomedegradation, thus inhibiting SMAD3-mediated TGF-beta responses.Hyperphosphorylation of the serine-repeat motif of COL4A3BP/CERTleads to its inactivation by dissociation from the Golgi complex,thus down-regulating ER-to-Golgi transport of ceramide andsphingomyelin synthesis. Triggers PER1 proteasomal degradationprobably through phosphorylation. {ECO:0000269|PubMed:15077195,ECO:0000269|PubMed:15342122, ECO:0000269|PubMed:15917222,ECO:0000269|PubMed:18794808, ECO:0000269|PubMed:19005213}. Plays a role in signal transduction by regulating theintracellular concentration of cyclic nucleotides. Thisphosphodiesterase catalyzes the specific hydrolysis of cGMP to 5'-GMP (PubMed:9714779, PubMed:15489334). Specifically regulatesnitric-oxide-generated cGMP (PubMed:15489334).{ECO:0000269|PubMed:15489334, ECO:0000269|PubMed:9714779}.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CSNK1G2_PDE5A


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CSNK1G2_PDE5A


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors
CSNK1G2COL4A3BP, SMAD3, PER1, MTA1, C2orf44, RAP1GAP, RUNDC3B, DBNDD2, APP, PPP1R14A, APPBP2, KRTAP10-7, HOXB5, TMEM231, MAPK14, TMEM185A, CSNK1G1, SORT1, G3BP1, ATL2, CSNK1G3, GINS2, GINS4, DCAF16, GINS3, LRRIQ1, GINS1, SDC1, NISCHPDE5AAIPL1, MIOS, FGFR1OP, BLM, SUPT5H, WDR24, PATZ1, FKBP15


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CSNK1G2_PDE5A


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
TgenePDE5AO76074DB00277TheophyllinecGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved
TgenePDE5AO76074DB00862VardenafilcGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved
TgenePDE5AO76074DB00975DipyridamolecGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved
TgenePDE5AO76074DB06237AvanafilcGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved
TgenePDE5AO76074DB00203SildenafilcGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved|investigational
TgenePDE5AO76074DB00806PentoxifyllinecGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved|investigational
TgenePDE5AO76074DB00820TadalafilcGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved|investigational
TgenePDE5AO76074DB06267UdenafilcGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved|investigational
TgenePDE5AO76074DB04272Citric AcidcGMP-specific 3',5'-cyclic phosphodiesterasesmall moleculeapproved|nutraceutical|vet_approved

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RelatedDiseases for CSNK1G2_PDE5A


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgenePDE5AC0027627Neoplasm Metastasis1CTD_human