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Fusion gene ID: 8659 |
FusionGeneSummary for CSNK1G2_PDE5A |
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Fusion gene information | Fusion gene name: CSNK1G2_PDE5A | Fusion gene ID: 8659 | Hgene | Tgene | Gene symbol | CSNK1G2 | PDE5A | Gene ID | 1455 | 8654 |
Gene name | casein kinase 1 gamma 2 | phosphodiesterase 5A | |
Synonyms | CK1g2 | CGB-PDE|CN5A|PDE5 | |
Cytomap | 19p13.3 | 4q26 | |
Type of gene | protein-coding | protein-coding | |
Description | casein kinase I isoform gamma-2casein kinase ICKI-gamma 2casein kinase 1 isoform gamma-2 | cGMP-specific 3',5'-cyclic phosphodiesterasecGMP-binding cGMP-specific 3',5'-cyclic nucleotide phosphodiesterasecGMP-specific phosphodiesterase PDE5A2cGMP-specific phosphodiesterase type 5Aphosphodiesterase 5A, cGMP-specificphosphodiesterase isozyme | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | P78368 | O76074 | |
Ensembl transtripts involved in fusion gene | ENST00000255641, ENST00000587123, | ENST00000354960, ENST00000394439, ENST00000264805, ENST00000512739, | |
Fusion gene scores | * DoF score | 4 X 4 X 2=32 | 2 X 2 X 2=8 |
# samples | 4 | 2 | |
** MAII score | log2(4/32*10)=0.321928094887362 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: CSNK1G2 [Title/Abstract] AND PDE5A [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Hgene | CSNK1G2 | GO:0018105 | peptidyl-serine phosphorylation | 25500533 |
Tgene | PDE5A | GO:0046069 | cGMP catabolic process | 14687666 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | SARC | TCGA-DX-A3U5-01A | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000255641 | ENST00000354960 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
5CDS-5UTR | ENST00000255641 | ENST00000394439 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
5CDS-5UTR | ENST00000255641 | ENST00000264805 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
5CDS-intron | ENST00000255641 | ENST00000512739 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
intron-3CDS | ENST00000587123 | ENST00000354960 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
intron-5UTR | ENST00000587123 | ENST00000394439 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
intron-5UTR | ENST00000587123 | ENST00000264805 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
intron-intron | ENST00000587123 | ENST00000512739 | CSNK1G2 | chr19 | 1969958 | + | PDE5A | chr4 | 120528452 | - |
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FusionProtFeatures for CSNK1G2_PDE5A |
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Hgene | Tgene |
CSNK1G2 | PDE5A |
Serine/threonine-protein kinase. Casein kinases areoperationally defined by their preferential utilization of acidicproteins such as caseins as substrates. It can phosphorylate alarge number of proteins. Participates in Wnt signaling.Phosphorylates COL4A3BP/CERT, MTA1 and SMAD3. Involved in braindevelopment and vesicular trafficking and neurotransmitterreleasing from small synaptic vesicles. Regulates fast synaptictransmission mediated by glutamate. SMAD3 phosphorylation promotesits ligand-dependent ubiquitination and subsequent proteasomedegradation, thus inhibiting SMAD3-mediated TGF-beta responses.Hyperphosphorylation of the serine-repeat motif of COL4A3BP/CERTleads to its inactivation by dissociation from the Golgi complex,thus down-regulating ER-to-Golgi transport of ceramide andsphingomyelin synthesis. Triggers PER1 proteasomal degradationprobably through phosphorylation. {ECO:0000269|PubMed:15077195,ECO:0000269|PubMed:15342122, ECO:0000269|PubMed:15917222,ECO:0000269|PubMed:18794808, ECO:0000269|PubMed:19005213}. | Plays a role in signal transduction by regulating theintracellular concentration of cyclic nucleotides. Thisphosphodiesterase catalyzes the specific hydrolysis of cGMP to 5'-GMP (PubMed:9714779, PubMed:15489334). Specifically regulatesnitric-oxide-generated cGMP (PubMed:15489334).{ECO:0000269|PubMed:15489334, ECO:0000269|PubMed:9714779}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CSNK1G2_PDE5A |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CSNK1G2_PDE5A |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CSNK1G2 | COL4A3BP, SMAD3, PER1, MTA1, C2orf44, RAP1GAP, RUNDC3B, DBNDD2, APP, PPP1R14A, APPBP2, KRTAP10-7, HOXB5, TMEM231, MAPK14, TMEM185A, CSNK1G1, SORT1, G3BP1, ATL2, CSNK1G3, GINS2, GINS4, DCAF16, GINS3, LRRIQ1, GINS1, SDC1, NISCH | PDE5A | AIPL1, MIOS, FGFR1OP, BLM, SUPT5H, WDR24, PATZ1, FKBP15 |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CSNK1G2_PDE5A |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | PDE5A | O76074 | DB00277 | Theophylline | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved |
Tgene | PDE5A | O76074 | DB00862 | Vardenafil | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved |
Tgene | PDE5A | O76074 | DB00975 | Dipyridamole | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved |
Tgene | PDE5A | O76074 | DB06237 | Avanafil | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved |
Tgene | PDE5A | O76074 | DB00203 | Sildenafil | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved|investigational |
Tgene | PDE5A | O76074 | DB00806 | Pentoxifylline | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved|investigational |
Tgene | PDE5A | O76074 | DB00820 | Tadalafil | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved|investigational |
Tgene | PDE5A | O76074 | DB06267 | Udenafil | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved|investigational |
Tgene | PDE5A | O76074 | DB04272 | Citric Acid | cGMP-specific 3',5'-cyclic phosphodiesterase | small molecule | approved|nutraceutical|vet_approved |
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RelatedDiseases for CSNK1G2_PDE5A |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | PDE5A | C0027627 | Neoplasm Metastasis | 1 | CTD_human |