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Center for Computational Systems Medicine
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FusionGeneSummary

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FusionProtFeature

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FusionGeneSequence

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FusionGenePPI

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RelatedDrugs

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RelatedDiseases

Fusion gene ID: 8407

FusionGeneSummary for CREB3L2_LMO2

check button Fusion gene summary
Fusion gene informationFusion gene name: CREB3L2_LMO2
Fusion gene ID: 8407
HgeneTgene
Gene symbol

CREB3L2

LMO2

Gene ID

64764

4005

Gene namecAMP responsive element binding protein 3 like 2LIM domain only 2
SynonymsBBF2H7LMO-2|RBTN2|RBTNL1|RHOM2|TTG2
Cytomap

7q33

11p13

Type of geneprotein-codingprotein-coding
Descriptioncyclic AMP-responsive element-binding protein 3-like protein 2B-ZIB transcription factorBBF2 human homolog on chromosome 7FUS/BBF2H7 proteinTCAG_1951439basic transcription factor 2cAMP-responsive element-binding protein 3-like protein 2rhombotin-2LIM domain only protein 2T-cell translocation gene 2T-cell translocation protein 2cysteine-rich protein TTG-2rhombotin-like 1
Modification date2018052320180522
UniProtAcc

Q70SY1

P25791

Ensembl transtripts involved in fusion geneENST00000330387, ENST00000456390, 
ENST00000452463, ENST00000458726, 
ENST00000468127, 
ENST00000395833, 
ENST00000257818, ENST00000493667, 
Fusion gene scores* DoF score11 X 10 X 3=3302 X 2 X 2=8
# samples 132
** MAII scorelog2(13/330*10)=-1.34395440121736
possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs).
DoF>8 and MAII<0
log2(2/8*10)=1.32192809488736
Context

PubMed: CREB3L2 [Title/Abstract] AND LMO2 [Title/Abstract] AND fusion [Title/Abstract]

Functional or gene categories assigned by FusionGDB annotation
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types
** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10)

check button Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez
PartnerGeneGO IDGO termPubMed ID
HgeneCREB3L2

GO:0045893

positive regulation of transcription, DNA-templated

17178827

TgeneLMO2

GO:0042789

mRNA transcription by RNA polymerase II

16314316

TgeneLMO2

GO:0045944

positive regulation of transcription by RNA polymerase II

16314316

TgeneLMO2

GO:0097067

cellular response to thyroid hormone stimulus

19375645


check button Fusion gene information from three resources
(ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018))
* All genome coordinats were lifted-over on hg19.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
Data typeSourceCancer typeSampleHgeneHchrHbpHstrandTgeneTchrTbpTstrand
ChiTaRS3.1BI028029CREB3L2chr7

137564579

-LMO2chr11

33899752

+
* LD: Li Ding group's fusion gene list
  RV: Roel Verhaak group's fusion gene list
  ChiTaRs fusion database

check button Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure.
* Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser.
ORFHenstTenstHgeneHchrHbpHstrandTgeneTchrTbpTstrand
intron-intronENST00000330387ENST00000395833CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000330387ENST00000257818CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000330387ENST00000493667CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000456390ENST00000395833CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000456390ENST00000257818CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000456390ENST00000493667CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000452463ENST00000395833CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000452463ENST00000257818CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000452463ENST00000493667CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000458726ENST00000395833CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000458726ENST00000257818CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000458726ENST00000493667CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000468127ENST00000395833CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000468127ENST00000257818CREB3L2chr7

137564579

-LMO2chr11

33899752

+
intron-intronENST00000468127ENST00000493667CREB3L2chr7

137564579

-LMO2chr11

33899752

+

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FusionProtFeatures for CREB3L2_LMO2


check buttonMain function of each fusion partner protein. (from UniProt)
HgeneTgene
CREB3L2

Q70SY1

LMO2

P25791

Transcription factor involved in unfolded proteinresponse (UPR). In the absence of endoplasmic reticulum (ER)stress, inserted into ER membranes, with N-terminal DNA-bindingand transcription activation domains oriented toward the cytosolicface of the membrane. In response to ER stress, transported to theGolgi, where it is cleaved in a site-specific manner by residentproteases S1P/MBTPS1 and S2P/MBTPS2. The released N-terminalcytosolic domain is translocated to the nucleus to effecttranscription of specific target genes. Plays a critical role inchondrogenesis by activating the transcription of SEC23A, whichpromotes the transport and secretion of cartilage matrix proteins,and possibly that of ER biogenesis-related genes (By similarity).In a neuroblastoma cell line, protects cells from ER stress-induced death (PubMed:17178827). In vitro activates transcriptionof target genes via direct binding to the CRE site(PubMed:17178827). {ECO:0000250|UniProtKB:Q8BH52,ECO:0000269|PubMed:17178827}. Acts with TAL1/SCL to regulate red blood celldevelopment. Also acts with LDB1 to maintain erythroid precursorsin an immature state.

check buttonRetention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at

download page

.

* Minus value of BPloci means that the break pointn is located before the CDS.
- In-frame and retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note

- In-frame and not-retained protein feature among the 13 regional features.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenProtein featureProtein feature note


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FusionGeneSequence for CREB3L2_LMO2


check button For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences.
(nt: nucleotides, aa: amino acids)

* Fusion amino acid sequences.

* Fusion transcript sequences (only coding sequence (CDS) region).

* Fusion transcript sequences (Full-length transcript).

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FusionGenePPI for CREB3L2_LMO2


check button Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in

ChiPPI page

.

check button Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160)
HgeneHgene's interactorsTgeneTgene's interactors


check button - Retained PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenStill interaction with


check button - Lost PPIs in in-frame fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


check button - Retained PPIs, but lost function due to frame-shift fusion.
PartnerGeneHbpTbpENSTStrandBPexonTotalExonProtein feature loci*BPlociTotalLenInteraction lost with


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RelatedDrugs for CREB3L2_LMO2


check button Drugs targeting genes involved in this fusion gene.
(DrugBank Version 5.1.0 2018-04-02)
PartnerGeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CREB3L2_LMO2


check button Diseases associated with fusion partners.
(DisGeNet 4.0)
PartnerGeneDisease IDDisease name# pubmedsSource
TgeneLMO2C1961099Precursor T-Cell Lymphoblastic Leukemia-Lymphoma2CTD_human
TgeneLMO2C0023492Leukemia, T-Cell1CTD_human
TgeneLMO2C0023893Liver Cirrhosis, Experimental1CTD_human