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Fusion gene ID: 8215 |
FusionGeneSummary for CPD_GSTO1 |
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Fusion gene information | Fusion gene name: CPD_GSTO1 | Fusion gene ID: 8215 | Hgene | Tgene | Gene symbol | CPD | GSTO1 | Gene ID | 9455 | 9446 |
Gene name | homer scaffold protein 2 | glutathione S-transferase omega 1 | |
Synonyms | ACPD|CPD|DFNA68|HOMER-2|VESL-2 | GSTO 1-1|GSTTLp28|HEL-S-21|P28|SPG-R | |
Cytomap | 15q25.2 | 10q25.1 | |
Type of gene | protein-coding | protein-coding | |
Description | homer protein homolog 2cupidinhomer homolog 2homer homolog 3homer scaffolding protein 2homer, neuronal immediate early gene, 2 | glutathione S-transferase omega-1MMA(V) reductaseS-(Phenacyl)glutathione reductaseepididymis secretory protein Li 21glutathione S-transferase omega 1-1glutathione-S-transferase likeglutathione-dependent dehydroascorbate reductasemonomethylarsonic a | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | O75976 | P78417 | |
Ensembl transtripts involved in fusion gene | ENST00000225719, ENST00000543464, ENST00000584051, | ENST00000493946, ENST00000539281, ENST00000369710, ENST00000369713, | |
Fusion gene scores | * DoF score | 19 X 10 X 9=1710 | 2 X 2 X 1=4 |
# samples | 16 | 2 | |
** MAII score | log2(16/1710*10)=-3.4178525148859 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(2/4*10)=2.32192809488736 | |
Context | PubMed: CPD [Title/Abstract] AND GSTO1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | GSTO1 | GO:0010880 | regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum | 11035031 |
Tgene | GSTO1 | GO:0019852 | L-ascorbic acid metabolic process | 11511179 |
Tgene | GSTO1 | GO:0042178 | xenobiotic catabolic process | 12928150 |
Tgene | GSTO1 | GO:0060315 | negative regulation of ryanodine-sensitive calcium-release channel activity | 11035031 |
Tgene | GSTO1 | GO:0060316 | positive regulation of ryanodine-sensitive calcium-release channel activity | 11035031 |
Tgene | GSTO1 | GO:0071243 | cellular response to arsenic-containing substance | 11511179 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
ChiTaRS3.1 | AA234313 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
5CDS-3UTR | ENST00000225719 | ENST00000493946 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000225719 | ENST00000539281 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000225719 | ENST00000369710 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000225719 | ENST00000369713 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000543464 | ENST00000493946 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000543464 | ENST00000539281 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000543464 | ENST00000369710 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
5CDS-3UTR | ENST00000543464 | ENST00000369713 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
intron-3UTR | ENST00000584051 | ENST00000493946 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
intron-3UTR | ENST00000584051 | ENST00000539281 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
intron-3UTR | ENST00000584051 | ENST00000369710 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
intron-3UTR | ENST00000584051 | ENST00000369713 | CPD | chr17 | 28766081 | + | GSTO1 | chr10 | 106019490 | + |
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FusionProtFeatures for CPD_GSTO1 |
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Hgene | Tgene |
CPD | GSTO1 |
Exhibits glutathione-dependent thiol transferase anddehydroascorbate reductase activities. Has S-(phenacyl)glutathionereductase activity. Has also glutathione S-transferase activity.Participates in the biotransformation of inorganic arsenic andreduces monomethylarsonic acid (MMA) and dimethylarsonic acid.{ECO:0000269|PubMed:10783391, ECO:0000269|PubMed:11511179,ECO:0000269|PubMed:17226937, ECO:0000269|PubMed:18028863,ECO:0000269|PubMed:21106529}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CPD_GSTO1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CPD_GSTO1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CPD_GSTO1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Tgene | GSTO1 | P78417 | DB00143 | Glutathione | Glutathione S-transferase omega-1 | small molecule | approved|investigational|nutraceutical |
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RelatedDiseases for CPD_GSTO1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | GSTO1 | C0023418 | leukemia | 1 | CTD_human |
Tgene | GSTO1 | C0024115 | Lung diseases | 1 | CTD_human |
Tgene | GSTO1 | C0032927 | Precancerous Conditions | 1 | CTD_human |
Tgene | GSTO1 | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
Tgene | GSTO1 | C0037274 | Dermatologic disorders | 1 | CTD_human |
Tgene | GSTO1 | C0279626 | Squamous cell carcinoma of esophagus | 1 | CTD_human |
Tgene | GSTO1 | C0524851 | Neurodegenerative Disorders | 1 | CTD_human |