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Fusion gene ID: 8195 |
FusionGeneSummary for CPA1_SCYL1 |
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Fusion gene information | Fusion gene name: CPA1_SCYL1 | Fusion gene ID: 8195 | Hgene | Tgene | Gene symbol | CPA1 | SCYL1 | Gene ID | 1357 | 57410 |
Gene name | carboxypeptidase A1 | SCY1 like pseudokinase 1 | |
Synonyms | CPA | GKLP|HT019|NKTL|NTKL|P105|SCAR21|TAPK|TEIF|TRAP | |
Cytomap | 7q32.2 | 11q13.1 | |
Type of gene | protein-coding | protein-coding | |
Description | carboxypeptidase A1carboxypeptidase A1 (pancreatic)pancreatic carboxypeptidase A | N-terminal kinase-like proteinSCY1-like protein 1SCY1-like, kinase-like 1coated vesicle-associated kinase of 90 kDalikely ortholog of mouse N-terminal kinase-like proteintelomerase regulation-associated proteintelomerase transcriptional elements-int | |
Modification date | 20180523 | 20180522 | |
UniProtAcc | P15085 | Q96KG9 | |
Ensembl transtripts involved in fusion gene | ENST00000011292, ENST00000484324, | ENST00000525364, ENST00000270176, ENST00000420247, ENST00000533862, ENST00000279270, ENST00000524944, ENST00000527009, ENST00000534462, | |
Fusion gene scores | * DoF score | 2 X 2 X 2=8 | 2 X 2 X 2=8 |
# samples | 2 | 2 | |
** MAII score | log2(2/8*10)=1.32192809488736 | log2(2/8*10)=1.32192809488736 | |
Context | PubMed: CPA1 [Title/Abstract] AND SCYL1 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
Tgene | SCYL1 | GO:0006890 | retrograde vesicle-mediated transport, Golgi to ER | 18556652 |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | PAAD | TCGA-HZ-8003-01A | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
Frame-shift | ENST00000011292 | ENST00000525364 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
Frame-shift | ENST00000011292 | ENST00000270176 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
Frame-shift | ENST00000011292 | ENST00000420247 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
Frame-shift | ENST00000011292 | ENST00000533862 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
Frame-shift | ENST00000011292 | ENST00000279270 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
Frame-shift | ENST00000011292 | ENST00000524944 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
5CDS-5UTR | ENST00000011292 | ENST00000527009 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
5CDS-intron | ENST00000011292 | ENST00000534462 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-3CDS | ENST00000484324 | ENST00000525364 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-3CDS | ENST00000484324 | ENST00000270176 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-3CDS | ENST00000484324 | ENST00000420247 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-3CDS | ENST00000484324 | ENST00000533862 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-3CDS | ENST00000484324 | ENST00000279270 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-3CDS | ENST00000484324 | ENST00000524944 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-5UTR | ENST00000484324 | ENST00000527009 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
3UTR-intron | ENST00000484324 | ENST00000534462 | CPA1 | chr7 | 130027929 | + | SCYL1 | chr11 | 65293392 | + |
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FusionProtFeatures for CPA1_SCYL1 |
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Hgene | Tgene |
CPA1 | SCYL1 |
Carboxypeptidase that catalyzes the release of a C-terminal amino acid, but has little or no action with -Asp, -Glu,-Arg, -Lys or -Pro. {ECO:0000269|PubMed:8806703}. | Regulates COPI-mediated retrograde protein traffic atthe interface between the Golgi apparatus and the endoplasmicreticulum (PubMed:18556652). Involved in the maintenance of theGolgi apparatus morphology (PubMed:26581903). Has no detectablekinase activity in vitro (PubMed:18556652).{ECO:0000269|PubMed:18556652, ECO:0000269|PubMed:26581903}. Isoform 6 acts as transcriptional activator. It binds tothree different types of GC-rich DNA binding sites (box-A, -B and-C) in the beta-polymerase promoter region. It also binds to theTERT promoter region. {ECO:0000269|PubMed:18556652}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for CPA1_SCYL1 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for CPA1_SCYL1 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
CPA1 | ARRB1 | SCYL1 | MYC, COIL, APP, SPTY2D1, CWC27, CD93, CDC25A, CHD1L, GORAB, CRTC3, SEC31A, AURKA, REST, ACTR1B, POLA2, NTRK1, TMEM17, XPO1, CTDSPL2, CCNF, SMURF1, CDH1, EGFR, KLHL2, AVIL, AGPAT3, DUSP23, UBR3, NEK7, P4HA2, TES |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for CPA1_SCYL1 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CPA1_SCYL1 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Hgene | CPA1 | C0149521 | Pancreatitis, Chronic | 1 | CTD_human |