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Fusion gene ID: 8165 |
FusionGeneSummary for COX20_SMR3B |
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Fusion gene information | Fusion gene name: COX20_SMR3B | Fusion gene ID: 8165 | Hgene | Tgene | Gene symbol | COX20 | SMR3B | Gene ID | 116228 | 10879 |
Gene name | COX20, cytochrome c oxidase assembly factor | submaxillary gland androgen regulated protein 3B | |
Synonyms | FAM36A | P-B|PBII|PRL3|PROL3|SMR1B | |
Cytomap | 1q44 | 4q13.3 | |
Type of gene | protein-coding | protein-coding | |
Description | cytochrome c oxidase assembly protein COX20, mitochondrialCOX20 Cox2 chaperone homologcytochrome c oxidase protein 20 homologfamily with sequence similarity 36, member A | submaxillary gland androgen-regulated protein 3Bproline rich 3proline-rich peptide P-Bproline-rich protein 3salivary proline-rich proteinsubmaxillary gland androgen regulated protein 3 homolog B | |
Modification date | 20180523 | 20180523 | |
UniProtAcc | Q5RI15 | P02814 | |
Ensembl transtripts involved in fusion gene | ENST00000411948, ENST00000366528, ENST00000498262, | ENST00000504825, ENST00000304915, | |
Fusion gene scores | * DoF score | 3 X 5 X 2=30 | 9 X 8 X 2=144 |
# samples | 5 | 3 | |
** MAII score | log2(5/30*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/144*10)=-2.26303440583379 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: COX20 [Title/Abstract] AND SMR3B [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | LD | BRCA | TCGA-AN-A0G0-01A | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
3UTR-3UTR | ENST00000411948 | ENST00000504825 | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
3UTR-3UTR | ENST00000411948 | ENST00000304915 | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
intron-3UTR | ENST00000366528 | ENST00000504825 | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
intron-3UTR | ENST00000366528 | ENST00000304915 | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
3UTR-3UTR | ENST00000498262 | ENST00000504825 | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
3UTR-3UTR | ENST00000498262 | ENST00000304915 | COX20 | chr1 | 245008030 | + | SMR3B | chr4 | 71255573 | + |
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FusionProtFeatures for COX20_SMR3B |
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Hgene | Tgene |
COX20 | SMR3B |
Essential for the assembly of the mitochondrialrespiratory chain complex IV (CIV), also known as cytochrome coxidase (PubMed:23125284). Acts as a chaperone in the early stepsof cytochrome c oxidase subunit II (MT-CO2/COX2) maturation,stabilizing the newly synthesized protein and presenting it tometallochaperones SCO1/2 which in turn facilitates theincorporation of the mature MT-CO2/COX2 into the assembling CIVholoenzyme (PubMed:24403053). {ECO:0000269|PubMed:23125284,ECO:0000269|PubMed:24403053}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
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FusionGeneSequence for COX20_SMR3B |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
* Fusion transcript sequences (only coding sequence (CDS) region). |
* Fusion transcript sequences (Full-length transcript). |
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FusionGenePPI for COX20_SMR3B |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
COX20 | COX2, CBWD1, COMMD4, UQCC1, UQCC2, GK, MED12, NDUFA4, COQ9, C15orf48, C16orf91, ECM1 | SMR3B | RAD21, UBQLN1, UBTD2, RASSF10, BCHE, TNFRSF19, SNRPF |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for COX20_SMR3B |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for COX20_SMR3B |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |