|
||||||
|
 | |
| |
| |
| |
| |
|
Fusion gene ID: 8083 |
FusionGeneSummary for COPG2_PODXL |
 Fusion gene summary |
| Fusion gene information | Fusion gene name: COPG2_PODXL | Fusion gene ID: 8083 | Hgene | Tgene | Gene symbol | COPG2 | PODXL | Gene ID | 26958 | 5420 |
| Gene name | coatomer protein complex subunit gamma 2 | podocalyxin like | |
| Synonyms | 2-COP|gamma-2-COP | Gp200|PC|PCLP|PCLP-1 | |
| Cytomap | 7q32.2 | 7q32.3 | |
| Type of gene | protein-coding | protein-coding | |
| Description | coatomer subunit gamma-2coat protein, nonclathrin, gamma-2-copgamma-2-coat proteintesticular secretory protein Li 12 | podocalyxinGCTM-2 antigenpodocalyxin-like protein 1 | |
| Modification date | 20180523 | 20180527 | |
| UniProtAcc | Q9UBF2 | O00592 | |
| Ensembl transtripts involved in fusion gene | ENST00000445977, | ENST00000541194, ENST00000537928, ENST00000378555, ENST00000322985, ENST00000465001, | |
| Fusion gene scores | * DoF score | 3 X 2 X 3=18 | 3 X 2 X 3=18 |
| # samples | 3 | 3 | |
| ** MAII score | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | log2(3/18*10)=0.736965594166206 effective Gene in Pan-Cancer Fusion Genes (eGinPCFGs). DoF>8 and MAII>0 | |
| Context | PubMed: COPG2 [Title/Abstract] AND PODXL [Title/Abstract] AND fusion [Title/Abstract] | ||
| Functional or gene categories assigned by FusionGDB annotation | |||
| * DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
| Gene ontology of each fusion partner gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Partner | Gene | GO ID | GO term | PubMed ID |
| Hgene | COPG2 | GO:0006891 | intra-Golgi vesicle-mediated transport | 11056392 |
| Tgene | PODXL | GO:0030335 | positive regulation of cell migration | 18456258 |
| Tgene | PODXL | GO:0033634 | positive regulation of cell-cell adhesion mediated by integrin | 18456258 |
| Fusion gene information from three resources (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| TCGA | RV | STAD | TCGA-BR-4357-01A | COPG2 | chr7 | 130337709 | - | PODXL | chr7 | 131196192 | - |
| * LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
| Open reading frame (ORF) analsis of fusion genes based on Ensembl gene isoform structure. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
| ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
| Frame-shift | ENST00000445977 | ENST00000541194 | COPG2 | chr7 | 130337709 | - | PODXL | chr7 | 131196192 | - |
| Frame-shift | ENST00000445977 | ENST00000537928 | COPG2 | chr7 | 130337709 | - | PODXL | chr7 | 131196192 | - |
| Frame-shift | ENST00000445977 | ENST00000378555 | COPG2 | chr7 | 130337709 | - | PODXL | chr7 | 131196192 | - |
| Frame-shift | ENST00000445977 | ENST00000322985 | COPG2 | chr7 | 130337709 | - | PODXL | chr7 | 131196192 | - |
| 5CDS-5UTR | ENST00000445977 | ENST00000465001 | COPG2 | chr7 | 130337709 | - | PODXL | chr7 | 131196192 | - |
Top |
FusionProtFeatures for COPG2_PODXL |
| Main function of each fusion partner protein. (from UniProt) |
| Hgene | Tgene |
| COPG2 | PODXL |
| The coatomer is a cytosolic protein complex that bindsto dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosyntheticprotein transport from the ER, via the Golgi up to the trans Golginetwork. Coatomer complex is required for budding from Golgimembranes, and is essential for the retrograde Golgi-to-ERtransport of dilysine-tagged proteins. In mammals, the coatomercan only be recruited by membranes associated to ADP-ribosylationfactors (ARFs), which are small GTP-binding proteins; the complexalso influences the Golgi structural integrity, as well as theprocessing, activity, and endocytic recycling of LDL receptors (Bysimilarity). {ECO:0000250}. | Involved in the regulation of both adhesion and cellmorphology and cancer progression. Function as an anti-adhesivemolecule that maintains an open filtration pathway betweenneighboring foot processes in the podocyte by charge repulsion.Acts as a pro-adhesive molecule, enhancing the adherence of cellsto immobilized ligands, increasing the rate of migration and cell-cell contacts in an integrin-dependent manner. Induces theformation of apical actin-dependent microvilli. Involved in theformation of a preapical plasma membrane subdomain to set upinitial epithelial polarization and the apical lumen formationduring renal tubulogenesis. Plays a role in cancer development andaggressiveness by inducing cell migration and invasion through itsinteraction with the actin-binding protein EZR. Affects EZR-dependent signaling events, leading to increased activities of theMAPK and PI3K pathways in cancer cells.{ECO:0000269|PubMed:17616675, ECO:0000269|PubMed:18456258}. |
| Retention analysis result of each fusion partner protein across 39 protein features of UniProt such as six molecule processing features, 13 region features, four site features, six amino acid modification features, two natural variation features, five experimental info features, and 3 secondary structure features. Here, because of limited space for viewing, we only show the protein feature retention information belong to the 13 regional features. All retention annotation result can be downloaded at . * Minus value of BPloci means that the break pointn is located before the CDS. |
| - In-frame and retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
| - In-frame and not-retained protein feature among the 13 regional features. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Top |
FusionGeneSequence for COPG2_PODXL |
| For in-frame fusion transcripts, we provide the fusion transcript sequences and fusion amino acid sequences. (nt: nucleotides, aa: amino acids) |
| * Fusion amino acid sequences. |
| * Fusion transcript sequences (only coding sequence (CDS) region). |
| * Fusion transcript sequences (Full-length transcript). |
Top |
FusionGenePPI for COPG2_PODXL |
| Go to ChiPPI (Chimeric Protein-Protein interactions) to see the chimeric PPI interaction in . |
| Protein-protein interactors with each fusion partner protein in wild-type (BIOGRID-3.4.160) |
| Hgene | Hgene's interactors | Tgene | Tgene's interactors |
| COPG2 | COPB1, COPG1, MAGED1, DRD1, PMS2, MYC, ELAVL1, SIRT7, COPB2, COPA, COPG2, ARCN1, COPE, COPZ1, NDUFB8, ECT2, HES4, FBXO6, NUDCD1, STAU1, SHMT2, CD74, ATP1B2, HTR6, NTRK1, TMED10, HERC2, XPO1, MCM2, SNW1, CDC5L, SENP3, CDH1, PTPRD, TES | PODXL | SLC9A3R2, SELL, CDK2, NXF1, LGALS3, LGALS8, LGALS9, FCN1, PILRA, TMEM17, MRAP2, RHPN1, HSPA12A, NCR3LG1, IMPDH1, HSPA12B, SPAG9 |
| - Retained PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
| - Lost PPIs in in-frame fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
| - Retained PPIs, but lost function due to frame-shift fusion. |
| Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
Top |
RelatedDrugs for COPG2_PODXL |
| Drugs targeting genes involved in this fusion gene. (DrugBank Version 5.1.0 2018-04-02) |
| Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for COPG2_PODXL |
| Diseases associated with fusion partners. (DisGeNet 4.0) |
| Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
| Hgene | COPG2 | C0043094 | Weight Gain | 1 | CTD_human |
| Tgene | PODXL | C0007273 | Carotid Artery Diseases | 1 | CTD_human |
| Tgene | PODXL | C0019080 | Hemorrhage | 1 | CTD_human |
| Tgene | PODXL | C0033578 | Prostatic Neoplasms | 1 | CTD_human |
| Tgene | PODXL | C0040053 | Thrombosis | 1 | CTD_human |
Copyright 2018-Present -The University of Texas Health Science Center at Houston (UTHealth)
|