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Fusion gene ID: 7804 |
FusionGeneSummary for COBLL1_SMYD3 |
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Fusion gene information | Fusion gene name: COBLL1_SMYD3 | Fusion gene ID: 7804 | Hgene | Tgene | Gene symbol | COBLL1 | SMYD3 | Gene ID | 22837 | 64754 |
Gene name | cordon-bleu WH2 repeat protein like 1 | SET and MYND domain containing 3 | |
Synonyms | COBLR1 | KMT3E|ZMYND1|ZNFN3A1|bA74P14.1 | |
Cytomap | 2q24.3 | 1q44 | |
Type of gene | protein-coding | protein-coding | |
Description | cordon-bleu protein-like 1COBL-like 1 | histone-lysine N-methyltransferase SMYD3SET and MYND domain-containing protein 3bA74P14.1 (novel protein)zinc finger MYND domain-containing protein 1zinc finger protein, subfamily 3A (MYND domain containing), 1zinc finger, MYND domain containing 1 | |
Modification date | 20180523 | 20180519 | |
UniProtAcc | Q53SF7 | Q9H7B4 | |
Ensembl transtripts involved in fusion gene | ENST00000375458, ENST00000342193, ENST00000409184, ENST00000392717, ENST00000194871, ENST00000491126, | ENST00000541742, ENST00000490107, ENST00000388985, ENST00000366517, ENST00000403792, | |
Fusion gene scores | * DoF score | 7 X 5 X 7=245 | 17 X 9 X 13=1989 |
# samples | 10 | 31 | |
** MAII score | log2(10/245*10)=-1.29278174922785 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | log2(31/1989*10)=-2.68170315555951 possibly effective Gene in Pan-Cancer Fusion Genes (peGinPCFGs). DoF>8 and MAII<0 | |
Context | PubMed: COBLL1 [Title/Abstract] AND SMYD3 [Title/Abstract] AND fusion [Title/Abstract] | ||
Functional or gene categories assigned by FusionGDB annotation |
* DoF score (Degree of Frequency) = # partners X # break points X # cancer types ** MAII score (Major Active Isofusion Index) = log2(# samples/DoF score*10) |
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Partner | Gene | GO ID | GO term | PubMed ID |
![]() (ChiTars (NAR, 2018), tumorfusions (NAR, 2018), Gao et al. (Cell, 2018)) * All genome coordinats were lifted-over on hg19. * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
Data type | Source | Cancer type | Sample | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
TCGA | RV | LUSC | TCGA-22-5474-01A | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
* LD: Li Ding group's fusion gene list RV: Roel Verhaak group's fusion gene list ChiTaRs fusion database |
![]() * Click on the break point to see the gene structure around the break point region using the UCSC Genome Browser. |
ORF | Henst | Tenst | Hgene | Hchr | Hbp | Hstrand | Tgene | Tchr | Tbp | Tstrand |
In-frame | ENST00000375458 | ENST00000541742 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000375458 | ENST00000490107 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000375458 | ENST00000388985 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000375458 | ENST00000366517 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000375458 | ENST00000403792 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000342193 | ENST00000541742 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000342193 | ENST00000490107 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
In-frame | ENST00000342193 | ENST00000388985 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000342193 | ENST00000366517 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000342193 | ENST00000403792 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000409184 | ENST00000541742 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000409184 | ENST00000490107 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000409184 | ENST00000388985 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000409184 | ENST00000366517 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000409184 | ENST00000403792 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000392717 | ENST00000541742 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000392717 | ENST00000490107 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000392717 | ENST00000388985 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000392717 | ENST00000366517 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000392717 | ENST00000403792 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000194871 | ENST00000541742 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000194871 | ENST00000490107 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
Frame-shift | ENST00000194871 | ENST00000388985 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-5UTR | ENST00000194871 | ENST00000366517 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5CDS-intron | ENST00000194871 | ENST00000403792 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000491126 | ENST00000541742 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000491126 | ENST00000490107 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-3CDS | ENST00000491126 | ENST00000388985 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-5UTR | ENST00000491126 | ENST00000366517 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
5UTR-intron | ENST00000491126 | ENST00000403792 | COBLL1 | chr2 | 165697666 | - | SMYD3 | chr1 | 246093239 | - |
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FusionProtFeatures for COBLL1_SMYD3 |
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Hgene | Tgene |
COBLL1 | SMYD3 |
Histone methyltransferase. Specifically methylates 'Lys-4' of histone H3, inducing di- and tri-methylation, but notmonomethylation (PubMed:15235609, PubMed:22419068). Alsomethylates 'Lys-5' of histone H4 (PubMed:22419068). Plays animportant role in transcriptional activation as a member of an RNApolymerase complex (PubMed:15235609). Binds DNA containing 5'-CCCTCC-3' or 5'-GAGGGG-3' sequences (PubMed:15235609).{ECO:0000269|PubMed:15235609, ECO:0000269|PubMed:22419068}. |
![]() * Minus value of BPloci means that the break pointn is located before the CDS. |
- In-frame and retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Tgene | >SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 205_206 | 177 | 429 | Region | S-adenosyl-L-methionine binding |
Tgene | >SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 205_206 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
Tgene | >SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 205_206 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
- In-frame and not-retained protein feature among the 13 regional features. |
Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Protein feature | Protein feature note |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000342193 | - | 1 | 14 | 1157_1177 | 13 | 1167 | Domain | WH2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000375458 | - | 1 | 13 | 1157_1177 | 13 | 1129 | Domain | WH2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000392717 | - | 2 | 15 | 1157_1177 | 51 | 1205 | Domain | WH2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000409184 | - | 2 | 14 | 1157_1177 | 51 | 1167 | Domain | WH2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000342193 | - | 1 | 14 | 329_334 | 13 | 1167 | Motif | Note=KKRRAP 1 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000342193 | - | 1 | 14 | 398_403 | 13 | 1167 | Motif | Note=KKRRAP 2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000375458 | - | 1 | 13 | 329_334 | 13 | 1129 | Motif | Note=KKRRAP 1 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000375458 | - | 1 | 13 | 398_403 | 13 | 1129 | Motif | Note=KKRRAP 2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000392717 | - | 2 | 15 | 329_334 | 51 | 1205 | Motif | Note=KKRRAP 1 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000392717 | - | 2 | 15 | 398_403 | 51 | 1205 | Motif | Note=KKRRAP 2 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000409184 | - | 2 | 14 | 329_334 | 51 | 1167 | Motif | Note=KKRRAP 1 |
Hgene | >COBLL1 | chr2:165697666 | chr1:246093239 | ENST00000409184 | - | 2 | 14 | 398_403 | 51 | 1167 | Motif | Note=KKRRAP 2 |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 4_240 | 177 | 429 | Domain | SET |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 4_240 | 118 | 370 | Domain | SET |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 4_240 | 118 | 370 | Domain | SET |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 14_16 | 177 | 429 | Region | S-adenosyl-L-methionine binding |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 14_16 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 14_16 | 118 | 370 | Region | S-adenosyl-L-methionine binding |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000388985 | - | 4 | 12 | 49_87 | 177 | 429 | Zinc finger | MYND-type |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000490107 | - | 4 | 12 | 49_87 | 118 | 370 | Zinc finger | MYND-type |
Tgene | SMYD3 | chr2:165697666 | chr1:246093239 | ENST00000541742 | - | 4 | 12 | 49_87 | 118 | 370 | Zinc finger | MYND-type |
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FusionGeneSequence for COBLL1_SMYD3 |
![]() (nt: nucleotides, aa: amino acids) |
* Fusion amino acid sequences. |
>In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000541742_chr1_246093239_-_265aa MDGRTPRPQDAPARXSATLSPSVMRRCRKLVLAYIPVSLCSITAVTPTVRLCSMGPTSYCEQSETSRWERSSPSATWICXXPVRSAGSSX GTSTALNVTVSVAKPRTRMLICXLVMSKYGRKFKNPXKKLKNXRHTGSGSRFWPCARQSXAAILNGFPISTSTSXRCSTAPWMPASTSAC >In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000490107_chr1_246093239_-_265aa MDGRTPRPQDAPARXSATLSPSVMRRCRKLVLAYIPVSLCSITAVTPTVRLCSMGPTSYCEQSETSRWERSSPSATWICXXPVRSAGSSX GTSTALNVTVSVAKPRTRMLICXLVMSKYGRKFKNPXKKLKNXRHTGSGSRFWPCARQSXAAILNGFPISTSTSXRCSTAPWMPASTSAC >In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000388985_chr1_246093239_-_265aa MDGRTPRPQDAPARXSATLSPSVMRRCRKLVLAYIPVSLCSITAVTPTVRLCSMGPTSYCEQSETSRWERSSPSATWICXXPVRSAGSSX GTSTALNVTVSVAKPRTRMLICXLVMSKYGRKFKNPXKKLKNXRHTGSGSRFWPCARQSXAAILNGFPISTSTSXRCSTAPWMPASTSAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000541742_chr1_246093239_-_265aa MDGRTPRPQDAPARXSATLSPSVMRRCRKLVLAYIPVSLCSITAVTPTVRLCSMGPTSYCEQSETSRWERSSPSATWICXXPVRSAGSSX GTSTALNVTVSVAKPRTRMLICXLVMSKYGRKFKNPXKKLKNXRHTGSGSRFWPCARQSXAAILNGFPISTSTSXRCSTAPWMPASTSAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000490107_chr1_246093239_-_265aa MDGRTPRPQDAPARXSATLSPSVMRRCRKLVLAYIPVSLCSITAVTPTVRLCSMGPTSYCEQSETSRWERSSPSATWICXXPVRSAGSSX GTSTALNVTVSVAKPRTRMLICXLVMSKYGRKFKNPXKKLKNXRHTGSGSRFWPCARQSXAAILNGFPISTSTSXRCSTAPWMPASTSAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000388985_chr1_246093239_-_265aa MDGRTPRPQDAPARXSATLSPSVMRRCRKLVLAYIPVSLCSITAVTPTVRLCSMGPTSYCEQSETSRWERSSPSATWICXXPVRSAGSSX GTSTALNVTVSVAKPRTRMLICXLVMSKYGRKFKNPXKKLKNXRHTGSGSRFWPCARQSXAAILNGFPISTSTSXRCSTAPWMPASTSAC |
* Fusion transcript sequences (only coding sequence (CDS) region). |
>In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000541742_chr1_246093239_-_797nt ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTG GTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGC GAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGA GGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGA AGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAA GCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGT TGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGA TGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACAC >In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000490107_chr1_246093239_-_797nt ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTG GTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGC GAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGA GGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGA AGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAA GCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGT TGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGA TGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACAC >In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000388985_chr1_246093239_-_797nt ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTG GTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGC GAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGA GGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGA AGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAA GCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGT TGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGA TGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000541742_chr1_246093239_-_797nt ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTG GTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGC GAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGA GGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGA AGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAA GCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGT TGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGA TGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000490107_chr1_246093239_-_797nt ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTG GTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGC GAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGA GGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGA AGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAA GCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGT TGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGA TGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000388985_chr1_246093239_-_797nt ATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTG GTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGC GAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGA GGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGA AGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAA GCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGT TGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGA TGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACAC |
* Fusion transcript sequences (Full-length transcript). |
>In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000541742_chr1_246093239_-_1242nt CGGCGGCGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCG GGCTCTTGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACG CGCCGCCTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCT GCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACC CCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACC TGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGG ACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACT GGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGG TGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGA TTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAA TGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAG AATGCGACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACA CACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCA >In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000490107_chr1_246093239_-_1240nt CGGCGGCGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCG GGCTCTTGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACG CGCCGCCTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCT GCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACC CCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACC TGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGG ACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACT GGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGG TGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGA TTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAA TGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAG AATGCGACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACA CACTCTATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCA >In-frame_COBLL1_ENST00000375458_chr2_165697666_-_SMYD3_ENST00000388985_chr1_246093239_-_1019nt CGGCGGCGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCG GGCTCTTGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACG CGCCGCCTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCT GCAACTCTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACC CCAACTGTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACC TGGATATGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGG ACAAGGATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACT GGAAGTGGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGG TGCTCGACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGA TTTTTTTCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAA TGAAGAATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAG >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000541742_chr1_246093239_-_1236nt CGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCGGGCTCT TGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACGCGCCGC CTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACT CTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACT GTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATA TGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGG ATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGT GGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCG ACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTT TCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGA ATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCG ACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCT ATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000490107_chr1_246093239_-_1234nt CGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCGGGCTCT TGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACGCGCCGC CTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACT CTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACT GTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATA TGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGG ATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGT GGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCG ACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTT TCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGA ATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCG ACGCCAACATCAGAGCATCCTAAGGGAACGCAGTCAGAGGGAAATACGGCGTGTGTCTTTGTTGAATGCCTTATTGAGGTCACACACTCT ATGCTTTGTTAGCTGTGTGAACCTCTCCTATTGGAAATTCTGTTCCGTGTTTGTGTAGGTAAATAAAGGCAGACATGGTTTGCAAACCAC >In-frame_COBLL1_ENST00000342193_chr2_165697666_-_SMYD3_ENST00000388985_chr1_246093239_-_1013nt CGGCGCCCGCGGGCTGGGAGCCGGGGCCCGCAGGTGGAAGCGCACCCGGGAGGCGGGCCGGCCGGGGCTGGAGCGGCTCGGGCGGGCTCT TGACGCTCAGCCAGCTTCGCTCCGGCCTCGGGAAGGCGCGCGTCCCGCCCTGACCCGCCGGCCTCTCCCACCCCAGCAGTGACGCGCCGC CTGGGAGCTGGAGCCCGCGCAGCGCCCCGCAGGGCGATGGACGGCCGAACCCCGCGCCCGCAGGACGCCCCAGCCAGGTGATCTGCAACT CTTTCACCATCTGTAATGCGGAGATGCAGGAAGTTGGTGTTGGCCTATATCCCAGTATCTCTTTGCTCAATCACAGCTGTGACCCCAACT GTTCGATTGTGTTCAATGGGCCCCACCTCTTACTGCGAGCAGTCCGAGACATCGAGGTGGGAGAGGAGCTCACCATCTGCTACCTGGATA TGCTGATGACCAGTGAGGAGCGCCGGAAGCAGCTGAGGGACCAGTACTGCTTTGAATGTGACTGTTTCCGTTGCCAAACCCAGGACAAGG ATGCTGATATGCTAACTGGTGATGAGCAAGTATGGAAGGAAGTTCAAGAATCCCTGAAAAAAATTGAAGAACTGAAGGCACACTGGAAGT GGGAGCAGGTTCTGGCCATGTGCCAGGCAATCATAAGCAGCAATTCTGAACGGCTTCCCGATATCAACATCTACCAGCTGAAGGTGCTCG ACTGCGCCATGGATGCCTGCATCAACCTCGGCCTGTTGGAGGAAGCCTTGTTCTATGGTACTCGGACCATGGAGCCATACAGGATTTTTT TCCCAGGAAGCCATCCCGTCAGAGGGGTTCAAGTGATGAAAGTTGGCAAACTGCAGCTACATCAAGGCATGTTTCCCCAAGCAATGAAGA ATCTGAGACTGGCTTTTGATATTATGAGAGTGACACATGGCAGAGAACACAGCCTGATTGAAGATTTGATTCTACTTTTAGAAGAATGCG |
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FusionGenePPI for COBLL1_SMYD3 |
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Hgene | Hgene's interactors | Tgene | Tgene's interactors |
COBLL1 | PACSIN1, NRD1, PACSIN3, PACSIN2, AK1, DLG3, DVL2, HSP90AA1, SORT1, FGFR1OP, KIAA1107, ITGB3BP, SMEK1, CDH1, HMBOX1, AMOTL1, IFFO1, CDADC1, SCML1, UHRF1BP1L, DDHD1, FAM117A, TLK2 | SMYD3 | MEST, HELZ, POLR2A, HSP90AA1, HIST3H3, ESR1, EZH2, EED, APP, CAMK2B, NDUFAB1, NFYB, CYP39A1, VANGL1, H3F3C, TRIT1, ZNF557, CDC37, HSP90AB1, HSP90AB4P, HSP90AB3P, HSP90AA5P, MAGED4B, KDM3B, RCAN3, PLCB3, TRMT2A, KMT2E |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Still interaction with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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Partner | Gene | Hbp | Tbp | ENST | Strand | BPexon | TotalExon | Protein feature loci | *BPloci | TotalLen | Interaction lost with |
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RelatedDrugs for COBLL1_SMYD3 |
![]() (DrugBank Version 5.1.0 2018-04-02) |
Partner | Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for COBLL1_SMYD3 |
![]() (DisGeNet 4.0) |
Partner | Gene | Disease ID | Disease name | # pubmeds | Source |
Tgene | SMYD3 | C0236733 | Amphetamine-Related Disorders | 1 | CTD_human |